barSeed - Barley Seed Development Database

Probe CUST_6478_PI390587928

Source Contig U35_27922

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6478_PI390587928	Hv_44K_v2	TATCGTGTCAGAAGTTTGCTATATTAAATCTGTGATGGTATTTTCCATGGTTTGCCTTGA	500	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.611	1.614	1.544	1.063	0.353	0.385
Raw	132.100	210.664	180.926	184.266	21.711	26.629

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69770.1	2008	2e-24	9 - 68	100	60 / 60	minus	ABC47862
Harvest21	ABC47862	500	3e-25	17 - 76	100	60 / 60	minus	ABC47862
Harvest35	U35_27922	576	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_27922 576 Hv_44K_v2
GACAATGAAGGCCTTCAATGTGAGAATCCTTCCACAAATGCTGAACTTCAAAGACTACAG
CCCACTGTGAAGAGTAACAACATGACTGCTGACCCAGCTTTTCCAGAATCAATGAAGCCA
ATGTCAGCAGATCCCACTGAAGATATCAATTCGCAAGGAGCTACATCTGTTACTTCTGTC
AGAGCTATTACTAAGAGGGTAAAGATTGTTAGCCCTGTTAAGGGCCGCACAGTTTCTTAG
CATGGTGAATAGAACCGAACATCACGAAGAGCAGATGTCTTCTGGATATGACTACTAACT
GAGATGATCTAGATGGCTAGCTAATTTGTTGCTACATGCTGTTTTGACCAACTGTGCTGC
ACATCGGAGTTCTTTCAGCATTACACATGGCTTTCTGATGGCAAGCTTGTGCCGTTTTGT
TCCTTTTTTTGCATTTAGTATTTAACTGCCTTCATGTATAGCTGATATTAAATTGCAAGT
GTTTCTCTTGACATTAATGTTATCGTGTCAGAAGTTTGCTATATTAAATCTGTGATGGTA
TTTTCCATGGTTTGCCTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_27922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None