- Probe CUST_6477_PI390587928
- Source Contig U35_27923
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6477_PI390587928 | Hv_44K_v2 | TACTCAACTTTCCGCCTCAACTTGTCTGTCACATCGCCATACAATGCAGATTTTGATGGG | 596 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.141 | 0.841 | 1.510 | 1.159 | 0.933 | 0.825 |
| Raw | 173.514 | 179.215 | 314.952 | 339.827 | 103.936 | 103.396 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5852.6 | 825 | 2e-24 | 482 - 541 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_5852.1 | 5730 | 2e-24 | 5480 - 5539 | 100 | 60 / 60 | minus | ABC06412 |
| MLOC | MLOC_5852.5 | 774 | 2e-24 | 526 - 585 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_7554.1 | 4241 | 7e-23 | 2343 - 2402 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_7554.2 | 4046 | 7e-23 | 2248 - 2307 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_7554.3 | 3826 | 7e-23 | 2248 - 2307 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_7554.6 | 2234 | 7e-23 | 570 - 629 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_7554.4 | 4081 | 7e-23 | 2209 - 2268 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_7554.5 | 3883 | 7e-23 | 2123 - 2182 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_3790.1 | 733 | 8e-25 | 189 - 248 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_4993.1 | 1361 | 4e-23 | 646 - 705 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC25376 | 661 | 3e-25 | 597 - 656 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27923 | 662 | 3e-25 | 597 - 656 | 100 | 60 / 60 | plus |
Contig Sequence (662 bp)
>U35_27923 662 Hv_44K_v2 AACAACCCTGCTGGCGTTGCCGCTACGCGATCATTGCCCAGGGATGCCCTCTGGCGAAGG CGAGGGGAGGAGAGTGAAGTTGCAGCTGGGGAGGGGTGCTCATAGAATCAGTACACAAGT GATATTAAAACAAGGCAACACATATCTCCTAAGAGGTGCTTCCATGTTTCAAGCATTTTA TATCCGCCGACCTGTCACAAGGATGAGGAAAAAAGGTGGAATTGTTCGATCATTGAAGAT GCCTATCAATCAGATTGGTGAACTGCTATATTCTGAGTCATGGTTCCCTTAGAGAAATGA AAGTGCGGGAGGCCATGGAGGTTGGAGCTCCAACCACGTCAAGTAATTTATTTGACTGCA TAGATAATGTAGAAAATGGGCCTCACCCTCCCCGAGGAAAGACAGGTGCCAAGTACATTA TCAGGGAAGATGGCCAGAGGCTGGATCTTCGTTATGTGAAGAAAAGTAGTGATCAGCATC TGGAGCTGGGTTACAAGGTGGAAAGGCACCTCATTGATGGAGATTTTGTTCTTTTCAACC GGCAGCCCAGTCTTCACAAAGTGTCTATCATGGGGCATCGCTTCAAAATCATGCCTTACT CAACTTTCCGCCTCAACTTGTCTGTCACATCGCCATACAATGCAGATTTTGATGGGGATG AA
Homology of Contig U35_27923 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g05860.1 | 1872 | 3e-55 | protein|retrotransposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi3g16660.1 | 1863 | 1e-55 | |
| Arabidopsis v10 | AT4G35800.1 | 1839 | 4e-54 | | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839 |