barSeed - Barley Seed Development Database

Probe CUST_6475_PI390587928

Source Contig U35_27925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6475_PI390587928	Hv_44K_v2	TTATCAAAAAGGTTGAAAGATTTACGGCAAGGGAACGACGGCAGCAGCCAAAGAGCTTTG	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56325.1	894	2e-24	746 - 805	100	60 / 60	plus	ABC04501
MLOC	MLOC_56325.3	3735	2e-24	425 - 484	100	60 / 60	plus	ABC08038
MLOC	MLOC_56325.2	6805	2e-24	743 - 802	100	60 / 60	plus	ABC04501 ABC08038 ABC16810 ABC34614
MLOC	AK252892.1	705	7e-23	379 - 438	98	59 / 60	plus	None
MLOC	MLOC_56326.1	9583	9e-22	1435 - 1489	100	55 / 55	plus	ABC04501 ABC08038 ABC16810 ABC34614
JLOC1	JLOC1_36416.1	4776	8e-25	414 - 473	100	60 / 60	plus
Harvest21	ABC22269	602	3e-25	332 - 391	100	60 / 60	plus
Harvest35	U35_27925	604	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_27925 604 Hv_44K_v2
GCGAGCTCTGCGCCCCCGCCCCACCGTCGCCGGCGCCGTCGACGGGATGACGGCGGCATC
GAGGCTGTCCTACAAGAACGCAACCGTCGCCCTGTGCGCCATCAACGTGCTCGCGGTGGC
GCTCCTCCTCCGCAGCCACTTCTCGTCCTGGCCGCGGATCGCCGGCGGCCACCGGTTCGA
TTCAGATCAGCTACGGTATATATGGGAGTCCGAAGAGCTGCGCCGTGCTATGGAGCCTGT
GGATTTGATTAGGAGAGTGAAGGAAATTGAGCAAGAAGCTTATGGAGAGCCTGGCATGTC
AACAGCGCAAGAAGGGACGGCTGCTGTTGACTTATCAAAAAGGTTGAAAGATTTACGGCA
AGGGAACGACGGCAGCAGCCAAAGAGCTTTGGAGGAGTGGCGCAAGCGGAAGATGGAGCG
GGCGAGGCAGCGTGCGATCGGGAAGGACGGGATGATTCCCGGCACGAAGACACGGTGAAG
TAATGGTTTTTTTTGTTTGTTTGTTTGCCTGTTGCTCTGCTGCGGCGCGCAAATAACGTC
GTTGATCGGTCCGTTGGAGCGACAGTGGCCGCACGATCTTGTGTCCTGCATGTAAAATCA
CCTG

Homology of Contig U35_27925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57170.1	156	2e-72	protein\|expressed protein
Brachypodium v1_2	Bradi3g55330.2	155	6e-81
Arabidopsis v10	None