barSeed - Barley Seed Development Database

Probe CUST_6466_PI390587928

Source Contig U35_39909

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6466_PI390587928	Hv_44K_v2	CTTCCATGCGAGCATGAAACTAGGATCTTCTATCAACGAAAACTAAAGAAGGGCAACATG	457	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.663	1.792	0.751	0.711	1.612	3.205
Raw	3.137	21.239	6.857	10.794	8.806	19.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77067.2	1462	2e-24	303 - 362	100	60 / 60	minus	None
MLOC	MLOC_77067.1	1692	2e-24	626 - 685	100	60 / 60	minus	None
JLOC1	JLOC1_51401.2	1471	8e-25	1007 - 1066	100	60 / 60	plus
JLOC1	JLOC1_51401.1	1106	8e-25	993 - 1052	100	60 / 60	plus
Harvest21	ABC36165	520	3e-25	458 - 517	100	60 / 60	plus
Harvest35	U35_39909	520	3e-25	458 - 517	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_39909 520 Hv_44K_v2
GAGCCTCAAAATATATTGTTGGATGATAACATGACACCGAAAATCGCGGATTTTGGACTT
TCCAGGCTATTTGGCCAAGAACAAACACGGGCGAACACACAGAATGTTGTGGGATCATAC
GGATACATAGCTCCAGAATACCTATACAGAGGTGAAATCTCCACTCAGTCAGACATATAC
AGCTTAGGCCTATTAATCATCGAGACTACCACTGGCGAGAAGAACACCCCCAAACAGAAC
GAACCGTCAGCAAGGGAATTTATTGAAAGAGTACGTCAAAATTGGACACAAGGGCACATA
GCGTCCATATACCAGTTAAATCCAAATGGCCTCCAGGAAGTAAAACTATGCATTGAAATT
GGTCTGGAGTGTGTGCACATCGAGCGGAAGGGTAGACCTTCCATCGAAAGCATTGTTGAC
AGGCTCTATGGACGCTGTGCAAACCAGGACCCCACCACTTCCATGCGAGCATGAAACTAG
GATCTTCTATCAACGAAAACTAAAGAAGGGCAACATGGAA

Homology of Contig U35_39909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11780.1	269	1e-56	protein\|cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed
Brachypodium v1_2	Bradi4g21990.2	327	4e-72
Arabidopsis v10	None