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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6461_PI390587928Hv_44K_v2CCTCAAAATAAAAATAAAGATGTAAGGTGTACGGACGAATAAAAGTGCACATCCGAACCC663GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1010.3920.6042.0062.6777.239
Raw 26.042152.851211.2841077.485510.5261496.965



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_21677.18692e-24734 - 79310060 / 60plus ABC04213 ABC39109
JLOC1JLOC1_15035.17558e-25638 - 69710060 / 60plus
Harvest21ABC297321803e-25104 - 16310060 / 60plus
Harvest21ABC042137443e-25638 - 69710060 / 60plusABC04213
Harvest35U35_159547443e-25664 - 72310060 / 60plus



Contig Sequence (744 bp)

>U35_15954 744 Hv_44K_v2
TCGAGCACTGTTGGCCTAACGAGTCACGACTCACACCCGTCCATCGGCCATCAAAACTTC
ACAGAGATGCTGAGGTCCACCGGCCGCCTCCTGCTGCTCGCGCTGGCGGCGAGCCACCTG
CTGCTCGCCGCCGCCGGCGCTGGCTGCGAGCCGAGCGGCTCGCTCCGGCCGAGCCGGGGC
CACTCGTGCCAAGACTGCTGCAAGGCCGGGCAGGCGTACCCGACGTACAGGTGCTCGCCG
CCGGTCTCCTCCTCCACTCGTGCGGTCATGACGCTCAACAACTTTGACGAGGGCGGCGAA
GGCGGGGACCCGTCGGAGTGCGACGGCAAGTTCCACCACAACTCAGAGCGCGTGGTGGCG
CTGTCCACGGGGTGGTACAGCGGGGGCTCCCGCTGCGGCAACAACGTACGGATCCGAGCC
AACGGCAGGTCCGTGCTTGCCAAGGTCGTCGACGAGTGCGACACCCTCAACGGGTGCGAC
CGCGAGCACGGCTACCAGCCGCCGTGCCGCAACAACGTCGTCGACGCCTCCCAGGCCGTC
TGGGATGCTCTGGGCATCACCGGGGAGGAGGTCGGCGAGTACAACGTCACTTGGTCGGAT
GCATGAGCATGAACTGCGTGGCCGCCGGTGCAAGTGCAACTAGCTAATGTAAGGTGTATG
CCCCCTCAAAATAAAAATAAAGATGTAAGGTGTACGGACGAATAAAAGTGCACATCCGAA
CCCAAAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_15954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g42450.11935e-93protein|RIPER1 - Ripening-related family protein precursor, expressed
Brachypodium v1_2Bradi1g08250.11811e-62
Arabidopsis v10None