barSeed - Barley Seed Development Database

Probe CUST_6459_PI390587928

Source Contig U35_15956

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6459_PI390587928	Hv_44K_v2	TGTATTGTGAACTTTCTTGAGTTGGAAATGCAAAGTAAATCAGATCGTTGCAAGGGTGTC	1512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355389	1572	2e-24	1483 - 1542	100	60 / 60	plus	ABC04501
JLOC1	JLOC1_15478.1	1558	8e-25	1341 - 1400	100	60 / 60	plus
Harvest21	ABC04501	1603	3e-25	1513 - 1572	100	60 / 60	plus	ABC04501
Harvest35	U35_15956	1658	3e-25	1513 - 1572	100	60 / 60	plus

Contig Sequence (1658 bp)

>U35_15956 1658 Hv_44K_v2
CGTCCCTCTCACCGCACACACCACAGCTCTCGGCTTCCTCCCCCCTCCCCTCCCCCTCCG
ACTCCGACGACCGCCACCGACGACGGCGAAGATGCAGGCGGCGGCGGCGGTGCGGCGCCA
CCTCCTCGACCAGCACCACCTCTCCCCGGCCTCCTCGGCCGCCATCGCCGCCTTCAGATC
CGCCGCCCAGCCGGCGCTCGCGCCCCAAGGGTTGGGCGGGGCGGATGGCGCGAGGTACAT
GTCCGCGAGGGCGCCGGCCGTCAAGGGGGCGGGCCATCTCGTCCGCAAGGGCACCGGAGG
GAGGTCCTCCGTGAGTGGAATCGTCGCTACGGTGTTTGGAGCTACTGGATTTCTTGGACG
CTATGTCGTTCAACAACTTGCGAAGATGGGATCTCAGGTTCTTGTCCCATTCAGAGGTTG
TGAGGATTCTCACCGCCACCTGAAGCTAATGGGTGACTTGGGTCAGATTGTTCCAATGAA
CTACAACCCAAGAGATGTGAATTCGATTAAGACTGCCGTGGCCAAGTCAAACGTGGTCAT
TAACCTCATTGGACGGGAGTATGAAACAAGAAACTATGGGTTTGAAGAAGTAAACCATCA
GATGGCTGAACAACTTGCAATGATATCCAAGGAGCATGGGGGTATCGTGAGATTTATCCA
GGTTTCTGCTTTGGGAGCATCAGCCTCTTCACCTTCTAGATTGCTTAGGGCAAAGGCTGC
TGGAGAGGAATCTGTGTTGAAAGAATTTCCTGAAGCTACAATTATGAGGCCTGCAACCCT
GATTGGCACAGAAGACCGGATTTTGAACAGATGGGCAATGTATGCCAAAAATTGGGGTTT
CCTCCCACTTTTTGGCGGTGGATCTACAAAGTTTCAGCCTGTTTATGTTGTGGATGTTGC
GGCTGCCATTGTCAACTCCCTCAAGGATGATGGCACCAGCATGGGAAAGACCTATGAGCT
TGGTGGACCGGATGTTTACACTGTTCATGATCTGGCTGAAATGATGTATGAAACAATTCG
CGAATATCCAAGATACGTGAATCTTCCTTTTCCTATCGCAAAGGCTATGGCTTCTCCAAG
GGAAATGCTGCTAAACAAAGTGCCTTTTCCTCTGCCAACCCCCTCCATTTTCAACCTTGA
TCAGATCAAGGCACTCTCCGTAGACAACCTAGTATCTGAAAATGCTCTCACTTTTGCGGA
CCTGGAAATCAAGCCTCACAAGTTGAAGGGCTACCCTACCGAGTTCCTTGTCTGCTACAG
GAAAGGCGGGCCGTCTTTTGGTTCTACCGTCAGCGAGAAGATGGGGAGCGAGGATGTGGC
CCCCCGGTTCTAAAGACGCTGTAGAATTAATGGTCATTTAGTTTTGAAGATAAAATTGTT
CTTGTGTTCTGTTTTCTTGCCATCTGCCGCTGATGCCAGACGCCTCACCCCTGGGCAGGA
CCAGATTTGATGCAAACTTTGGCCCCCGCCGTCGCCCTTTTTTCCCATATCAATAAGAAA
ATGCACGATCGATGTATTGTGAACTTTCTTGAGTTGGAAATGCAAAGTAAATCAGATCGT
TGCAAGGGTGTCAAAAAAAAAAAAAAAAAAATTGCGTTGCTCATGTGGCTGAGCAAGTAA
AATCGTTTCAATTTGTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g57180.1	409	protein\|NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g55340.1	413
Arabidopsis v10	AT2G20360.1	402	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:8786070-8789098 FORWARD LENGTH=402