barSeed - Barley Seed Development Database

Probe CUST_6458_PI390587928

Source Contig U35_15957

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6458_PI390587928	Hv_44K_v2	TGTGGTATCACCTTTATATTCTATCTGTGTCGGTGTACAAGTGTGTTTGGTGTGTTCAAA	1015	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54676.1	1351	7e-23	33 - 89	100	57 / 57	minus	ABC04383 ABC04384
JLOC1	JLOC1_35199.1	1427	4e-23	1350 - 1406	100	57 / 57	plus
Harvest21	ABC04384	1155	3e-25	1082 - 1141	100	60 / 60	plus	ABC04384
Harvest35	U35_15957	1089	3e-25	1016 - 1075	100	60 / 60	plus

Contig Sequence (1089 bp)

>U35_15957 1089 Hv_44K_v2
TCCCGGGATTTATAGATGGACAAGCTGTTCCTTACGACCCCAAATACCATGAGGAGTGGG
TGAGAAACAATGCCCGTGCCAATGAGAGATCCCGGCGCAACGACAGGCCTCGCAACTTTG
ACAGGTCGAGGAACTTTGAAAGGAGAAGGGAGAACACACAGGCCTACCAGAGCGGGCCTG
CTCCACCAGGGCAGAGCCAAATGCCACCCCATGATGCTGCTCCTCCAAGGCGTCCTCCAC
AGGGCCCGCCACCGCCTTCGGGTGCCCCACCAAATTACCAGTCCCATGCCCCAAACCCAC
AGGCGGGCTATGTTCCAGGAGGTGGACCAAACTATCAGAATGCACCGCCGCCCCCTGGAT
ACCAAGGTGCCCCAACCCCTGGATACCAAGGTGCCCCAACCCCTGGGTACCAAGCTGGTA
ACCAAGGCTACCAAGGTAATCCTGGTGGTAACATGCAGAATGGACCAGGCCCAGCCCATC
ATAGCAACAACCCTGGATACCACCAGGGTGGAGGGCCAGGTGTCAACCCGTCGCCCCCTT
TTGCAGGTGGCAACCAGCCTCCTCCCTACCAAGGCAGTGGCCCTAGCTATGGTGGTGGTG
CACCAGGCTACCAGGGCCAGCCAGGTAACCCAGGCTACGAAGGTGGCGGTAACTACAACA
ACGCCGCCCCTCCTCCCTATGAGGGCAGGGACGGGCCAGGGAGGAACTACCAGTAGAGAA
CACTGCTTGAAGATTGCCATGTAGGAAGTTAGTACGAGCGCTGCTCGAGTCGCCCTATGT
TGTTCTCGTGGACTTTTATGCATATATTCTCTATCCATAATGGTGTTTTGAGAACTAGAA
CTACTGCAAGCTTAGGTAAGTGGCTTTTATTTTGCTTGTTGTCGAAATAAATACACTGCT
GACTATCGTATGGAGCCAGAGCTTTGTTATTTGTTGCCCTATTGTAATAGCAACATGTTC
TGTGTTTCTGTCGTAAAAAAAAAAAAAAAAATCTGTGTCGGTGTTCTGTGTGTTCTGTGG
TATCACCTTTATATTCTATCTGTGTCGGTGTACAAGTGTGTTTGGTGTGTTCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_15957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None