barSeed - Barley Seed Development Database

Probe CUST_6457_PI390587928

Source Contig U35_15958

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6457_PI390587928	Hv_44K_v2	GGAGCCAGAGCTTTGTTATTTGTTGCCCTATTGTAATAGCAACATGTTCTGTGTTTCAAA	1482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54676.1	1351	7e-23	137 - 193	100	57 / 57	minus	ABC04383 ABC04384
MLOC	MLOC_54676.2	933	7e-23	83 - 139	100	57 / 57	minus	ABC04383 ABC04384
JLOC1	JLOC1_35199.1	1427	4e-23	1246 - 1302	100	57 / 57	plus
Harvest21	ABC04384	1155	1e-23	978 - 1034	100	57 / 57	plus	ABC04384
Harvest35	U35_15958	1556	3e-25	1483 - 1542	100	60 / 60	plus
Harvest35	U35_15957	1089	1e-23	912 - 968	100	57 / 57	plus

Contig Sequence (1556 bp)

>U35_15958 1556 Hv_44K_v2
AAACCCCCGTCGTCCCTCTCCGCCCCATTTCCCCAATCCCCTCCCCGCTAGGGTTTTCCA
ACCATGGCGTCGGCGTCGCGCGCGCTCCTCCTCTCCAGGGCCTCGCCCCTCCACGCCGCC
GCCTCTCGCTTCCTCCGCCCGCTCGCCGCCGCGGGGAGCCTCCTCCCGGCGGCGCTGGTC
CCGTCCCACGCCGCGGCGCCCTGGGCGGCGGCGAGGCGATTCGCGACGCAGCCCGCCAAC
TCGTCGCTGCGGGACTCGTCCCCGAACTGGAGCAACCGCCCGCCCAAGGAGACGATCCTC
CTCGACGGCTGCGACTTCGAGCACTGGCTCGTCGTCATGGAGCCGCCCCCAGGCGACGGC
GCCAACCCCGACGTCACCCGCGACGAGATCATCGACGGGTACATCAAGACCCTCGCACAG
GTCGTCGGAAGTGAAGATGAAGCCAGGATGAAGATCTACTCTGTGTCAACTAGGCATTAT
TTTGCTTTTGGTGCCCTAGTATCTGAGGAACTCTCCTACAAACTCAAAGAGTTGCCTAAG
GTCCGTTGGGTTCTTCCTGATTCATACCTTGATGTCAGAAATAAGGACTATGGAGGAGAA
CCATTTATAGATGGACAAGCTGTTCCTTACGACCCCAAATACCATGAGGAGTGGGTGAGA
AACAATGCCCGTGCCAATGAGAGATCCCGGCGCAACGACAGGCCTCGCAACTTTGACAGG
TCGAGGAACTTTGAAAGGAGAAGGGAGAACACACAGGCCTACCAGAGCGGGCCTGCTCCA
CCAGGGCAGAGCCAAATGCCACCCCATGATGCTGCTCCTCCAAGGCGTCCTCCACAGGGC
CCGCCACCGCCTTCGGGTGCCCCACCAAATTACCAGTCCCATGCCCCAAACCCACAGGCG
GGCTATGTTCCAGGAGGTGGACCAAACTATCAGAATGCACCGCCGCCCCCTGGATACCAA
GGTGCCCCAACCCCTGGGTACCAAGCTGGTAACCAAGGCTACCAAGGTAATCCTGGTGGC
AACATGCAGAATGGACCAGGCCCAGCCTATCTTAGCAACAACCCTGGATACCACCAGGGT
GGAGGGCCAGGTGTCAACCCGCCGCCCCCTTTTGCAGGTGGCAACCAGCCTCCTCCCTAC
CAAGGCAGTGGCCCTAGCTATGGTGGTGGTGCACCAGACTACCAGGGCCAGCCAGGTAAC
CCAGGCTACCAAGGTGGCGGTAACTACAACAACGCCGCCCCTCCTCCCTATGAGGGCAGG
GACGGGCCAGGGAGGAACTACCAGTAGAGAACACTGCTTGAAGAGTGCCATGTAGGAAGT
TAGTACGAGCGCTGCTCGAGTCGCCCTATGTTGTTCTCGTGGACTTTTATGCATATATTC
TCTATCCATAATGGTGTTTTGAGAACTAGAACTACTGCAAGCTTAGGTAAGTGGCTTTTA
TTTTGCTTGTTGTCGAAATAAATACACTGCTGACTATCGTATGGAGCCAGAGCTTTGTTA
TTTGTTGCCCTATTGTAATAGCAACATGTTCTGTGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04670.1	399	1e-101	protein\|DAG protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g41430.1	453	7e-98
Arabidopsis v10	AT3G15000.1	395	1e-78	cobalt ion binding \| chr3:5050321-5052121 FORWARD LENGTH=395