barSeed - Barley Seed Development Database

Probe CUST_6456_PI390587928

Source Contig U35_15959

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6456_PI390587928	Hv_44K_v2	ATGTGGTGGAAAGGTATCCAAAGTCCTCGACGATGATGACCTTCTTAGGGAGATTATCGT	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77387.2	2749	2e-24	1838 - 1897	100	60 / 60	minus	ABC04533
MLOC	MLOC_77387.1	2666	2e-24	1839 - 1898	100	60 / 60	minus	ABC04533
JLOC1	JLOC1_51609.2	3018	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_51609.1	3233	8e-25	982 - 1041	100	60 / 60	plus
Harvest21	ABC04532	630	3e-25	482 - 541	100	60 / 60	plus
Harvest35	U35_15959	631	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_15959 631 Hv_44K_v2
GCTCATGTGGAACAAGTAAAGAGGGAGACTCACATTTAGTTGAGTGGAAGCAAAGTGAAG
GATCTATCGAAAGGACATATTCTGGATTCCGTAAAACACCATCTAGTGTACTGCATGGTG
TCGTGCAGTTTGATACAGCTCATAATCACATTTTAGCTGCCGGTGAAGAGAGCCGAATTA
AGTTTTGGGATGCTGATAACACCAACATGCTTACCTGCATTGAAGCTGATGGAGGCTTGC
CGAGCTTTCCGCGGTTAAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTACAGTAG
AGAATGGCTTTAAGATACTTGCAAATACTGATGGGCTCAGGTCTTTATTGGCTTTTGGTG
TGGGTCATGTGGCTACAATGTCAGAAACTCGAGACCAAGCCAGAAAGGTTCGATCCATCT
TACCTGAGGAGTCAACCCCATGCATTGGAGTCTCCACGAATGATTCTGATGTGATGGCTG
CATGTGGTGGAAAGGTATCCAAAGTCCTCGACGATGATGACCTTCTTAGGGAGATTATCG
TCCGCGTTGGCTTCTCCACCACTCTTGTCCGTGCTGCCCTTGTCTGCAAGCGATGGTACC
ACCATGCCTCCGAACCCGCCTTCCTCTACCA

Homology of Contig U35_15959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15020.2	1119	9e-55	protein\|lissencephaly type-1-like homology motif, putative, expressed
Brachypodium v1_2	Bradi2g09080.1	1133	4e-62
Arabidopsis v10	None