barSeed - Barley Seed Development Database

Probe CUST_6455_PI390587928

Source Contig U35_27930

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6455_PI390587928	Hv_44K_v2	TTGCACAAGTGGCACTCTAAAATAGTACATAATATTACAAGATTAGTGGTGGAGGAATAC	576	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.556	1.409	1.299	0.838	0.751	0.438
Raw	26.754	34.606	30.490	29.794	9.459	5.294

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27376.1	890	2e-24	649 - 708	100	60 / 60	plus	ABC21383
JLOC1	JLOC1_18492.1	890	8e-25	647 - 706	100	60 / 60	plus
Harvest21	ABC21383	704	3e-25	69 - 128	100	60 / 60	minus	ABC21383
Harvest35	U35_27930	704	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_27930 704 Hv_44K_v2
GGGGCATTAGTGGCACCCGACGGGGTTTTCGTAAAAACCTTTGAAATTACTTCCTTTTTA
CCGTCACCATGCATGTGCTCACTACCATGCGTTGCACTACTAGCAACCTAACTACTCCCA
CCCATACAACCCTCATCTACCCAAGTGCAAGTGTCAATTAGGAACTGTCGGAAACACCCC
ATCGAGGTAGTTATCGATTCAACATCGTCTTATGCATCGGAATAAATGCTTCATATGACA
TGCATGAAAGTATTTTATCGAGCATGGTCAAGGGCTGCTTGCCTTGCTCAAATAGGTCTC
CGGGTCTTGGAGGTCTTCTGGTCCAAGCCCCTCGTCAGCAACGCAGTCTATCGCCGCAAT
ATAAACGGGCAAAAATAAGCACTCAACCCAAAACAGGGAAAATATTCTACTCAGAAAAAT
GTCACACCATTTTAGTAAAATACTAGGGTGAGTATAGGTTCTGTAAAAATTATTGTGTTT
TTTTTATTGCAATAAGTTGCAGAAACTATTTTAACAGTGTTAAAATGTCTAAAACAAGGT
CTTAAAATAATACAGTGCATGCAACCTTTCTAAAAATTGCACAAGTGGCACTCTAAAATA
GTACATAATATTACAAGATTAGTGGTGGAGGAATACTTGAATTTGGATAAATATTTAATC
CTGTGGAATTTTGGTAAAACAGAAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None