barSeed - Barley Seed Development Database

Probe CUST_6441_PI390587928

Source Contig U35_15960

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6441_PI390587928	Hv_44K_v2	GGGCCTCGGCATGGATTTATGCACATGCCCATCTGATATTGCATAACAGTTAAGAAAAAA	2932	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67697.2	3780	3e-22	4 - 59	100	56 / 56	minus	ABC04533 ABC32542
MLOC	MLOC_67697.1	4134	3e-22	14 - 69	100	56 / 56	minus	ABC04533 ABC32542
JLOC1	JLOC1_44721.1	4112	1e-22	4028 - 4083	100	56 / 56	plus
Harvest21	ABC04533	2999	5e-23	2924 - 2979	100	56 / 56	plus	ABC04533
Harvest35	U35_15960	3005	3e-25	2933 - 2992	100	60 / 60	plus

Contig Sequence (3005 bp)

>U35_15960 3005 Hv_44K_v2
CTCCCCCCATCCATCTCTCTCCTCACGAGAGGGGCGGCGACGACGACGGCGGAACCCTAG
AATTCGCCCGCTCCCTCCGAGACCGCGCGAGCGAGCGCCGCGCGCCGGCGGCGGGGCAGA
TCGAGCTCCTGGGTGGCGGCGCGGGCGCCATGTCGTCCCTCAGCCGCGAGCTCGTCTTCC
TCATCCTCCAGTTCCTCGACGAGGAGAAGTTCAAGGAAACCGTGCACAAGCTTGAACAAG
AGTCAGGGTTCTACTTCAACATCAAGTACTTTCATCCTTCTCGTCATACACTACTACTAG
TTGGATCTGCTAATGGTGAATTTACACTTTGGGAGATTGGTCTGCGTGAGAGGCTGGTCT
CAAAGCCCTTCAAAATTTGGGACATGCAAGCATGTTCAGCACAATTTCAGAGTGTCTTGG
CTAAAGACTCTTCCATGCCCATTAATCGAGTTACATGGAGCCCTGATGGCGACTTGATTG
GAGTTGCATTTGCAAAACATTTGATCCATCTGCACGCATACCAACAACCAAATGAAACAC
GCCAAGTTTTAGAGATTGAGGCTCATTCTGGTGGAGTTAATGACATAGCATTCTCCAGGC
CAAATAAGCAACTTTGTGTTGTCACTTGCGGAGATGACAAGCTGATAAGGGTCTGGGATA
TGCATGGGCAGAAAATATATTCGTTTGAAGGGCACGAGGCACCTGTGTATTCTATTTGCC
CTCACCACAAAGAGACTATTCAGTTTATTTTCTCAACTTCCATTGATGGGAAAATTAAGG
CATGGCTTTATGACAATGCGGGATCTAGGGTGGACTATGATGCTCCAGGAAAATGGTGTA
CTACAATGCTTTATAGTGCCGATGGAACTAGGTTGTTCTCATGTGGAACAAGCAAAGAGG
GAGACTCACATTTGGTTGAGTGGAACGAAAGCGAAGGATCTATCAAGAGAACATATTCTG
GATTCCGCAAAAAGGCATCTGGTGTAGTGCAGGGTGTCGTGCAGTTTGATACAGCTCAGA
ATCATATTTTAGCTGCTGGGGAGGATAGCCAAATTAAATTTTGGGATGTTGATAACACCA
ACATGCTTACTTGTATTGATGCTGACGGAGGCTTGCCAGGCCTTCCCCGGTTAAGGTTCA
ATAAAGAAGGGAATCTTCTCGCTGTTACTACAGTAGACAATGGCTTCAAGATACTTGCAA
ATTCTGATGGGCTCAGATCTTTACGGGCTTTTGGGAACCGGCCTTTCGAGGCGTTTAGAT
CACCATATGAAGCTTCTGCGATGAAGGTCTCAGGTGCTCCTGTTGTTGCGGGCATCTCTC
CTAACATTGGCCGAATGGATAACTTAGACAGGAACTCTCCTGCGAAGCCATCTCCTATAC
TGAATGGCGCTGATCCAGCATCTAGAAGCATAGATATAAAGCCAAGAATTTCAGAAGAAA
AACCTGATAAAGCAAAACCTTGGGAGCTGATGGAAGTTTTAAATCCCCAGCAATTCCGTG
TAGCTACATTGCCAGAAACTCCAGACCAAGCCAGCAAGGTTGTCAGACTTCTGTACACAA
ATTCTGGTGTCGGTTTGTTAGCACTAGGGTCTAATGCCATTCAAAGGCTGTGGAAATGGA
ACCGCAATGAGCAGAATCCAAATGGGAAGGCCACAGCTAGTGTTGTGCCACAGCATTGGC
AACCAAACAGTGGCCTTGTCATGGCAAATGATATCGGAGAAACACCTCCTGAGGAGTCAG
TCCCATGCATTGCACTCTCCAAGAATGATTCTTATGTGATGTCTGCATGTGGTGGAAAGG
TCTCATTGTTTAACATGATGACATTTAAGGTGATGACAACATTCATGCCACCTCCACCAG
CATCGACCTTTTTAGCATTTCACCCTCAAGATAATAACATCATAGCAATTGGAATGGAAG
ATTCAACCATCCACATATACAATGTCAGGGTAGATGAGGTCAAAATTAGACTCAAAGGAC
ATCAAAAGAGGATAACAGGATTGGCCTTTTCCAACAGCCTGCATATACTTGTTTCCTCGG
GCGCTGATGCACAGTTATGTGTGTGGGCCACCGATTCTTGGGAAAAGAAGAAATCGGTCG
CTATACAAATGCCAGCTGGGAAGGCTCCATTAGGAGACACAAGGGTTCAGTTTAATTCTG
ATCAAAATCGCTTGTTAGTAGTCCATGAGACTCAGATAGCTATTTATGATGCGTCCAAGA
TGGAGAGAATCTACCAGTGGATACCTCAGGGCACTTTGTCAGCTGGAATATCACACGCAT
CGTACTCGTGCAATAGCCAACTAGTTTTTGCTGCTTTTACTGATGGTAATGTTGCCATCT
TTGATGCGGATAACTTGAGATTACGATGCCGCATTGCATCATCTGCTTACATGTCTACGG
CAGCCATAAACAGCAATCCACCCATTTACCCTTTTGTTGTCGCTGCACATCCCCAAGAAC
CAAATCAATTCGCAGTCGGGCTGTCAGATGGATCTGTTAAAGTGATGGAGCCGTTGGAGT
CCGACGGGAAGTGGGGAACGCCTGCTCCAGTGGAAAATGGGGTGGCCAACGGCAGGGTGC
CAGCATCATCAGCTACAAGCAATCCAGCCACAGATCAAAACCAAAGATAGATGCATGTTG
AGTTAATTGTAAAATCTTGTCACCCGCATGTTGGTGTCAGCTAGGTTATTGTTGCGTTTC
TTGGGAATGTAAGATCAGCTGTGTGTTTATGTTGTAGATTGTGAGATGATAACCCTTGCT
CCTATGAGTGATTATTTTGTGATAGGGATAAAGTTCATAAGAAGGTCCGCCTTAGGTTTT
CGGCAGTTTAAACGGAATAGCCGGACGCATTAGGTATCTTGATGCATAATGATGTAATTC
AGTTCATGGTTTTGCATCCATTTTTTCGGGAAGAAAAAAAAAAAAAAGCCCCGGGCCTCG
GCATGGATTTATGCACATGCCCATCTGATATTGCATAACAGTTAAGAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_15960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g15020.2	1119	protein\|lissencephaly type-1-like homology motif, putative, expressed
Brachypodium v1_2	Bradi2g09080.1	1133
Arabidopsis v10	AT3G16830.1	1131	\| Symbols: TPR2 \| TOPLESS-related 2 \| chr3:5731709-5737531 FORWARD LENGTH=1131