barSeed - Barley Seed Development Database

Probe CUST_6440_PI390587928

Source Contig U35_15961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6440_PI390587928	Hv_44K_v2	AGAAGGACAGGCAATAAACTGGATGTGTTTGGGATCCAGCCCAACATATTTGGTTCGAAA	1470	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.368	1.561	1.270	0.990	0.444	0.422
Raw	1783.960	3191.273	2242.063	2674.451	442.802	447.399

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362680	1386	3e-21	1330 - 1386	98	56 / 57	plus	ABC04575 ABC39987
JLOC1	JLOC1_3736.1	1665	3e-24	1340 - 1398	100	59 / 59	plus
Harvest21	ABC04576	778	5e-23	3 - 61	98	58 / 59	minus
Harvest35	U35_15961	1544	3e-25	1471 - 1530	100	60 / 60	plus

Contig Sequence (1544 bp)

>U35_15961 1544 Hv_44K_v2
GGGCGAGGTAGGCAGTGAGGCAGTGAGCCAGCCACTTCTTCCTCCCTTCCGCTTACCCGA
GCTGAGGCTTTGACCCCCAACAACCTCCCCCCTCCCTCCCCCGTGCGCCTCTACTAAACC
AAGGAGGGACTAGTCGGCAAGGAGGGGAGGGAGATCTGACTGACGACGAGCCAGGGATGA
TGGAGAGCCAGCCGCTGCAGGCCGCGACGGCCGAGTCCCACGGCGACGGAGCCGCGGCAG
CCGACCAGGCCGGAGCCGGAGCTCCCCCCGCCGTCGTTCCCGGGAAGGAGTTCACGCGGA
CCTGCAAGGGCCTCGTCGTCGTGCTCATCGGCGGCTACGTGCTGCTCCAGCTCCTCCCAT
CCTCCCTCAACTACCTCGCCATCATCCCCGCCAAGACAATTCCCTTTGTATGGACCGTCT
TCACAGCCGGTTACATCGAGCAAGTCCTTCCAGGGGCTATTGGCAGTTCCCTTGGTCTGC
TCTTCTGTGGGAAGGATATCGAGCCAGTCTGGGGCCGCAAGGAGTTCTTGAAGTTCATTA
TCTTGATCAACTCCATCTGCGGTGTCCTTGCCTTCTGCATTGCCGTTGCACTGTACTATG
TCACCGGGAAAGAGAGCTTCCTTGTGACGCCACTTTCTGGCTTCCATGGCGCTCTTGCTG
GTTTTCTGGTTGGCCTGAAGCAGCTCTTGCCAAACCTTGAGCTCCCCATGTGCTTTTTCT
GGAAAATTAAGGCTAAGTGGATGCCATTCTTTGTCATGTGCTTCTCAACTATCATGGCCT
TCATCGTGCCGGATTCCATCAACTTCCTGCCGACTTTGTTGTCTGGGATGTACGTCAGCT
GGCTTTACCTGAGATACTTCCAGAGGAACCCACTGACAGGACTTAAGGGCGACCCAAGTG
ATGACTTCTCCTTCCCCAGCTTGTTCCCAGATGCCATGCGGCCAGTCACAGACCCAGTTG
CTAACATGTTCGACCGCATGTTGTGTGCGAGGTCCAAGACTTCGGAAATTGCCCTCCCAG
TTACCGATCCTACCAAGGCATCGAGAAGAAGGGAGCGTGGCGAGAGGGTTCTCGAGGAAA
GGATGGCCGCGGATCATGCGGCTGACGCCGAAGCCCCAGCTCACTCCGCGGAAGACTAAG
AGCTTCTTCCTCTCCTACGCCGTCATAGCAGCCACGGTCGCCTGCCTCCGTGCTTTGTAA
CTCCCCGGACTTGTTCTCTGGGGAGCATATTCATTTTTACAGTGGACCGATGATATGATA
ATACTTTACCGCCCTTTTTTGTTTCCTTGTTTTGCGAATATTGGTTGGTTAAATTGTGTT
GTAGTTCCTGATTACAGTGAGGAAAGAAGAAAAAGGGTGGCATCCCCTGCCCCAGATGTT
GTAATGTAGAAAGTGGGAATGACTTGTCAGTAACAATGTTAAGTATTTTTTCCATGTGCA
CTGTGATTTCAGTCAAGACAAAAAAAAAAAAGAAGGACAGGCAATAAACTGGATGTGTTT
GGGATCCAGCCCAACATATTTGGTTCGAAAAAAAAAAAAAAAAG

Homology of Contig U35_15961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01300.3	319	4e-157	protein\|OsRhmbd10 - Putative Rhomboid homologue, expressed
Brachypodium v1_2	Bradi5g02330.1	319	3e-162
Arabidopsis v10	AT3G07950.1	304	2e-71	rhomboid protein-related \| chr3:2531982-2534277 FORWARD LENGTH=304