barSeed - Barley Seed Development Database

Probe CUST_6435_PI390587928

Source Contig U35_15966

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6435_PI390587928	Hv_44K_v2	GTAGTCGGTCGTGTACAAGCACTTTATTTGCCTAACGTTGGGATTTTGCTTGACAAAAAA	953	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70597.1	1841	9e-22	1664 - 1718	100	55 / 55	plus	ABC04475 ABC37774
MLOC	MLOC_70597.2	1563	9e-22	1502 - 1556	100	55 / 55	plus	ABC04475 ABC37774
JLOC1	JLOC1_46857.2	2027	5e-22	1551 - 1605	100	55 / 55	plus
JLOC1	JLOC1_46857.1	1980	5e-22	1504 - 1558	100	55 / 55	plus
Harvest21	ABC04475	1024	3e-25	954 - 1013	100	60 / 60	plus	ABC04475
Harvest35	U35_15966	1024	3e-25	954 - 1013	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_15966 1024 Hv_44K_v2
GATCGGGCTTTGAGTGGCTGAAATGGCATCCACGGGGTCACTTGATAATTGCAGGATCGG
AAGACTGTAATATATGGATGTGGAATGCTGACCACAATGCCTTTCTGAATACATTTGCTG
GTCACAGTAGCACGGTGACATGTGGTGATTTTACCCCTGATGGTAAGCTTATATGTAGTG
GATCAGATGATGCAACACTTAGGATATGGGACCCCAGAAGCGCACAATGCAGACATGTTG
TTCGGGGCCATGGCTATCATACTCAAGGATTGACATGTTTAGCTATTACTCCGGACTCCC
AGTCAATTGTTAGTGGCTCGGAGGATAATTCTGTGCACATTGTGAGCATAAACTCAGGCC
AGGTTGTTGGTTCATTAGTTGGCCACACCAATTCCATCGAGTGCATTGGCATCTCATCGA
GGTACAACTGGGTGGCTACAGGGAGCATTGATAGAACTCTCATTATCTGGGACCTTGCTC
GCCAAGCAATTCGGTCTACTTGCGAGCATGATGAAGGTGTGACATGCCTGGCGTGGCTGG
GCTCGTCGAGGTATGTGGCGTCAGGATGCATCGACGGCATGGTGCGCATCTGGGACAGCC
TCTCCGGTGACTTGGCCCGCACCTTCAGCGGGCACAGGGACGTCGTGCAGTCGCTGGCCG
TCTCTGCTGACGGCAACTCCATAGTCTCGGTCTCCACGGATAAATCTGCCCGTGTCTTCG
ACATCTCTATGTTCAAGTGAGAAAAATCATAGCAGCAACAACATGGTTGATTTGGTTGGT
CATTCTGGCCAGTCAAAAGTGGGGGTTTGCTCAGCTTGTATGGTCAGGAATTATACTTAC
AGGCTTGCAGCCATCATGGGGCACTGAAAACTTTGGTTGGTACTGTACTTGTCCTTGACA
TGTGGTCAATGGTGCAAGTGGTACAAGAGTCACAAGACCCTCCTAAGTTGAGGGTAGTCG
GTCGTGTACAAGCACTTTATTTGCCTAACGTTGGGATTTTGCTTGACAAAAAAAAAAAAA
AAAA

Homology of Contig U35_15966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48090.1	395	3e-153	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g18750.2	396	2e-168
Arabidopsis v10	AT1G71840.1	407	6e-103	transducin family protein / WD-40 repeat family protein \| chr1:27022424-27024380 FORWARD LENGTH=407