barSeed - Barley Seed Development Database

Probe CUST_6431_PI390587928

Source Contig U35_27940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6431_PI390587928	Hv_44K_v2	ATCATACGGGCTAGAGAATCCGGGAAGGGTGTTCTGACCGCTCCTTTCCAGCTGCTCAAC	516	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358592	3833	2e-24	1092 - 1151	100	60 / 60	plus	ABC07973
MLOC	MLOC_44452.3	3071	2e-24	2815 - 2874	100	60 / 60	minus	ABC07973
MLOC	MLOC_44452.1	3150	2e-24	2894 - 2953	100	60 / 60	minus	ABC07973
MLOC	MLOC_44452.2	3025	2e-24	2770 - 2829	100	60 / 60	minus	ABC07973
JLOC1	JLOC1_28813.1	3426	8e-25	198 - 257	100	60 / 60	plus
Harvest21	ABC24394	661	3e-25	517 - 576	100	60 / 60	plus
Harvest35	U35_27940	661	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_27940 661 Hv_44K_v2
TGGATGGCGATGCTGTGGGTCGTCGGCTGGACGCTCATCTGCCTGCAGGTCTTCCGATAC
TCCAACTCGGGCGCCGTCGAGAAGCGCCGCGACTCGCTCGCCAGCATGTGCGACGAGCGC
GCCCGCATGCTCCAGGACCAGTTCAACGTCAGCATGAACCACCTCCAGGCGCTCGCCATC
CTCGTCAACACCTTCCACCACTCGCAGACCCCCTCCGCCATCACCCAGGCGACGTTCGCG
AGGTACGCGGAGAGGACGGCGTTCGAGCGGCCGCTGACGAGCGGGGTGGCGTACGCGGTG
CGGGTCACGCACGCCGAGCGGGACCAGTTCGAGCGGCAGCAGGGGTGGAGCATCAAGAAG
ATGTACTCCTCCCCGAGCTCGCAGGGGCCCGGCGACGCCGCCGTCGCGGAGATCCGCGGC
CCGGCCGACGAGTACGCCCCCGTCATCTTCGCGCAGGACGCCTACAAGAACGTCATCTCC
TTCGACATGCTCTCCGGCGCCGATGATCGCGAGAACATCATACGGGCTAGAGAATCCGGG
AAGGGTGTTCTGACCGCTCCTTTCCAGCTGCTCAACGGCCGCCTCGGGGTGATCTTGACA
TACTCCGTGTACAAGTCCGAGCCCCCCGCGAATGCGAGGCCGCAGGAGCGCATCCAAGCC
G

Homology of Contig U35_27940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69920.3	939	4e-111	protein\|histidine kinase, putative, expressed
Brachypodium v1_2	Bradi2g59127.1	1021	2e-120
Arabidopsis v10	AT1G27320.1	1036	5e-87	\| Symbols: AHK3, HK3 \| histidine kinase 3 \| chr1:9487780-9492027 FORWARD LENGTH=1036