barSeed - Barley Seed Development Database

Probe CUST_642_PI390587928

Source Contig U35_14071

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_642_PI390587928	Hv_44K_v2	CCTGCCTTTTCTTGTATGTAAGTTGTTCTTCTTGAATGTACTTTCGCCAAATTGTCAAAA	679	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.086	1.388	1.143	1.019	0.492	0.334
Raw	5143.370	10576.997	7402.583	10317.197	1765.670	1307.084

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14366.1	766	6e-24	331 - 389	100	59 / 59	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC47839
JLOC1	JLOC1_9813.1	520	3e-24	331 - 389	100	59 / 59	plus
Harvest21	ABC00971	738	3e-25	666 - 725	100	60 / 60	plus	ABC00971
Harvest35	U35_14071	752	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_14071 752 Hv_44K_v2
GCACGAGGCCCAGATCAGAAAGCACAAAGCACCAGACTCTCCTCGCCTCCCCTCTCGTCT
CCGACATGGCCCGCACCAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGA
AGCAGCTGGCCACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGC
CCCACCGCTTCCGCCCCGGTACCGTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCA
CGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACT
TCAAGACCGACCTCCGCTTCCAGTCCTCCGCCGTCTCCGCCCTGCAGGAGGCCGCTGAGG
CCTACCTCGTCGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCA
CCATCATGCCCAAGGACATCCAGCTCGCACGCCGCATCCGTGGCGAGAGGGCCTAGGCTG
CAATCCATCCATGCGACGGGTGGAAACGTGTGATCTACTGTCGTAGTGTTTCAGACTGTG
CCTGTATTGTTCTGTTCATGGTGGATGTGTTGTGCCTAGTCTGATGGTACCTTCTTGTTG
CCATCAGCAATGGAAATGAATATGTTAGCTTCCTGTTCTCAAAAAAAAAAAAAAAAAAAC
ATTCATCTGCGTTCGAATGCCTGCCTTTTCTTGTATGTAAGTTGTTCTTCTTGAATGTAC
TTTCGCCAAATTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	9e-82	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-82
Arabidopsis v10	AT5G65360.1	136	3e-82	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136