- Probe CUST_6426_PI390587928
- Source Contig U35_27945
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6426_PI390587928 | Hv_44K_v2 | TGCTGGACGATCTGTATATATACGTGTGCACCAGCCAGTACTAATCTTTGTGCGTCTTCT | 78 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.411 | 1.017 | 1.505 | 1.173 | 0.550 | 0.490 |
| Raw | 31.446 | 19.905 | 25.694 | 30.537 | 3.419 | 2.951 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC25533 | 415 | 3e-25 | 79 - 138 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27945 | 415 | 3e-25 | 79 - 138 | 100 | 60 / 60 | plus |
Contig Sequence (415 bp)
>U35_27945 415 Hv_44K_v2 CATCCTGTGGTCATCAACCAGTTCTACGTAGACCGCCACCATGTCCCAAACAATATGGTA GTGCTCGTGTCCGTTAGCTGCTGGACGATCTGTATATATACGTGTGCACCAGCCAGTACT AATCTTTGTGCGTCTTCTGGGGCCGGGTTTCCTAATTTGCTGCAGGGGGCGGTGGCGCTG AGCAACATAACGTACACGAACCTGAGCGGGACTTCGAGGCGGAAGACGGCCGTCGAGTTC GACTGCAGTGAGAGCGGCAGCTGCACGAACATCCACGTCAACTCCGTGGCGATCACGGCG GCGGACGGCGGAGGAACCGTGGCCCGTTGCCGGAACGTGCAAGGGGACACCTCCGGATAC GTCTACCCCAAGATCCCTTGCCTTCGATAACAATAACGTCCAGCACAGGGTTTAG
Homology of Contig U35_27945 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |