barSeed - Barley Seed Development Database

Probe CUST_6424_PI390587928

Source Contig U35_27948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6424_PI390587928	Hv_44K_v2	GCATTATACTATTGTACTTGGCATGGAAGAACAGTTTAGATAGCTGTAATGCTGTACTTC	526	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.258	1.709	1.173	0.863	0.386	0.424
Raw	576.290	1237.826	732.641	832.954	132.185	159.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250909.1	1841	2e-24	1693 - 1752	100	60 / 60	plus	ABC21917
MLOC	MLOC_76673.1	520	2e-24	220 - 279	100	60 / 60	plus	ABC21917
JLOC1	JLOC1_51131.1	419	8e-25	210 - 269	100	60 / 60	plus
Harvest21	ABC21917	589	3e-25	4 - 63	100	60 / 60	minus	ABC21917
Harvest35	U35_27948	589	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_27948 589 Hv_44K_v2
AGCTGCCCTCCGCCTCCAACTGTGCTGCTGCTATCAGCTTATTTTCTCAGGAGTTTAACC
CATCTGCCGCAGTTGACGTGTGGCACTGCATTGTGGAGCACCAAATTACTCCGGCTGAGG
AATCAGCCAAAGAGCTAATAGCTGGGCTTCTTGACTTTAGCAGATTCGCCGAGGTGAAGA
AATATACCGATGAGATGGTTGACATGGGAATTGAGTTGCCCCAGCCCACCATTGAAAAAA
TGAAGCGAGCATTTTACAAGGCTGACAGGCACCATACATATGACCAAATTGCAAGAAGGT
TGAAGCGGCGGTAGCAACACATCGATGGTATAATTCATCAGAAACGAGCGAGACAGAGAA
GCTGCACAATGAGGTTTTATGCTGCCAGGGCAAAGCTGTGGTACGTGTTCAAAGTGGAAC
GTGGATGGAAGTCTTTGGTGCAGCGGATACGATGTTATTTTGCACCAGTGGTTGTATGGA
AGATGTTTCCTGGAAGTATAGCATTAAGATGTTTCCTGGAAGTATAGCATTATACTATTG
TACTTGGCATGGAAGAACAGTTTAGATAGCTGTAATGCTGTACTTCGCA

Homology of Contig U35_27948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44030.1	465	7e-51	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g15960.2	466	3e-52
Arabidopsis v10	None