barSeed - Barley Seed Development Database

Probe CUST_6423_PI390587928

Source Contig U35_27949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6423_PI390587928	Hv_44K_v2	ATCTGCAACACATTCGAGGAGATCGAGTCGGAGGCATTACATCTCGTCCCCAACGCGCTG	216	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57500.1	1520	2e-24	731 - 790	100	60 / 60	plus	ABC13982 ABC19199
MLOC	MLOC_57500.2	1710	2e-24	782 - 841	100	60 / 60	plus	ABC13982 ABC19199
Harvest21	ABC22542	726	3e-25	217 - 276	100	60 / 60	plus
Harvest35	U35_27949	726	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_27949 726 Hv_44K_v2
GGCCTGCAGGCTTGTCACAGCTGGATCGACGATGACGTCCTCGACGAATGTGCCACCGTG
AGGAGGAACGAGACGATCCAGCTGAGCCCCAAGATGCCGCCAGTCGAGGCAGCCGAGATA
CCATGGGCTTGCGTGAGCAGCTCGCCGGACAGACGCAGGGTGATAATTCAGATCTTGCTC
AAGACCAACCCGATGATACCGCTGGCTGCCACCGTCATCTGCAACACATTCGAGGAGATC
GAGTCGGAGGCATTACATCTCGTCCCCAACGCGCTGCCCGTCGGACCCCTGGAAGCGCCG
GAGTTGTCGAGGTCTGCCGGCCAACTCTGGCCAGAGGAACTGGCCTGCCTCCCCTGGCTC
GACGCGCAGGCCCGCGGCTCCGTCGTCTACGTGGCCTTCGGGAGCTTCACCATCTTCGAC
GCGGCGCGGTTCCAGGAGCTCGCCGACGGGCTGGAGCTCACCGGCCGGCCCTTTCTTTGG
GCGGTCCGGCCGAACATCACCACCGGAATAGGAGAAGATTGGCTCGACGCCTTCAAGCGC
CGCGTGGAGGGCAAAGGTCTAGTCGTGGGCTGGGCGCCACAGCAGCGTGTGCTCTCGCAC
CCCTCCATCGCCTGCTTCGTGTCGCACTGCGGGTGGAACTCCACCATGGAAGGGCTGCGG
CACGGCGTGCCGTTCCTGTGCTGGCCATACTTCGCCGACCAGTTCTGCAACCAGAGCTAC
ATCTGC

Homology of Contig U35_27949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55040.1	458	5e-122	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08145.1	463	2e-143
Arabidopsis v10	AT3G02100.1	464	2e-65	UDP-Glycosyltransferase superfamily protein \| chr3:368840-370484 REVERSE LENGTH=464