barSeed - Barley Seed Development Database

Probe CUST_640_PI390587928

Source Contig U35_14073

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_640_PI390587928	Hv_44K_v2	TGTTTGAACCTGCTTCGCACCTTGGTTAATATGCATGTTATCTGGTTTGCCTACAAAAAA	1628	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.016	1.214	1.474	1.098	0.511	0.468
Raw	38229.200	68254.700	75267.367	86150.700	14367.627	14308.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46368.1	2257	5e-22	1896 - 1950	100	55 / 55	plus
Harvest21	ABC00127	718	3e-25	12 - 71	100	60 / 60	minus	ABC00127
Harvest21	ABC00089	1702	3e-25	1632 - 1691	100	60 / 60	plus
Harvest35	U35_14073	1699	3e-25	1629 - 1688	100	60 / 60	plus

Contig Sequence (1699 bp)

>U35_14073 1699 Hv_44K_v2
TCCCGGCGCAGAGACCGGCGTCTTCGTACTCGCCTCTCTCTCGCGCCTCCGAGCTTTGGC
CCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCGCCCGCCCGCTTCCCGTTTCTCCACCGG
CGTAGCGCCCGCCGCTCCGATCCGCCGGCGACATGAGGGAGTGCATCTCGATCCACATCG
GCCAGGCCGGCATCCAGGTCGGGAACGCCTGCTGGGAGCTCTACTGCCTCGAGCACGGCA
TTCAGCCTGATGGACAGATGCCCGGTGACAAGACCGTTGGGGGAGGTGATGATGCTTTCA
ACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCATGTACCCCGTGCTGTGTTTGTTGACC
TTGAGCCCACTGTGATTGATGAGGTGAGGACTGGCACTTACCGCCAGCTCTTCCACCCTG
AGCAGCTTATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA
TTGGCAAGGAGATTGTTGACCTATGCCTTGACCGTATCAGGAAGCTTGCAGATAACTGTA
CTGGTCTCCAGGGATTCCTTGTCTTCAACGCTGTTGGAGGTGGAACTGGCTCTGGCCTTG
GTTCTCTCCTTCTTGAGCGCCTCTCTGTTGACTATGGAAAGAAGTCCAAGCTTGGGTTCA
CAGTGTACCCATCTCCTCAGGTCTCCACTTCTGTTGTTGAGCCATACAACAGTGTCCTGT
CCACCCACTCTCTCCTTGAGCACACTGATGTGGCTGTCCTCCTTGACAATGAGGCCATCT
ATGACATCTGCCGCCGCTCCCTTGACATTGAGCGCCCAACATACACCAACCTCAACAGGC
TCGTTTCTCAGGTCATCTCATCCCTGACTGCTTCCCTGAGGTTTGATGGTGCTCTGAACG
TCGATGTGAATGAGTTCCAGACCAACCTGGTGCCCTACCCGAGGATCCACTTCATGCTTT
CTTCCTACGCCCCAGTGATCTCAGCTGAGAAGGCTTACCATGAGCAGCTCTCTGTTGCCG
AGATCACCAACAGCGCCTTCGAGCCTTCCTCCATGATGGCCAAGTGTGACCCCCGCCACG
GCAAGTACATGGCCTGCTGTCTCATGTACCGTGGTGATGTTGTGCCCAAGGACGTCAATG
CCGCTGTGGCCACCATCAAGACCAAGCGCACCATCCAGTTCGTCGACTGGTGCCCCACTG
GCTTCAAGTGCGGTATCAACTACCAGCCACCCAGCGTCGTCCCAGGCGGCGACCTCGCCA
AGGTCCAGAGGGCCGTGTGCATGATCTCCAACTCCACCAGCGTTGTCGAGGTCTTCTCCC
GCATCGACCACAAGTTCGACCTCATGTACGCCAAGCGTGCCTTTGTCCACTGGTACGTCG
GCGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCCCTGGAGA
AGGACTACGAGGAAGTTGGCGCCGAGTTCGACGAGGGCGAGGACGGTGATGAGGGCGACG
AGTACTAGAAGCCTGCCTCCTGGGGTGCTGCTGCCACCCTGTGATCTGCCCGAGTGGCTT
TATCTGTTTGAATGCTTGCTTTGCTTTGTGGTTGTTGGTTTACAACCGTGTTGTAAGAGC
CTGTGGTATGTTTGAACCTGCTTCGCACCTTGGTTAATATGCATGTTATCTGGTTTGCCT
ACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g14220.1	452	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g10150.1	452
Arabidopsis v10	AT4G14960.2	450	\| Symbols: TUA6 \| Tubulin/FtsZ family protein \| chr4:8548769-8550319 REVERSE LENGTH=450