barSeed - Barley Seed Development Database

Probe CUST_63_PI415269222

Source Contig TA33230_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_63_PI415269222	Hv_44K_v2	AGTCACAGTAGTAATATGAACAATAATGGTACGAATGATCTCTCTGGCTACATAGTGTGC	1347	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.584	1.727	1.335	0.837	0.319	0.288
Raw	184.590	320.707	208.483	205.031	28.181	26.782

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70800.1	2011	9e-22	1954 - 2011	98	57 / 58	plus	ABC04481

Contig Sequence (1407 bp)

>TA33230_4513 1407 Hv_44K_v2
CATCAAGAACGACCCCCGCCTCGAGGGCCTCGTCAAGATGGCCGATCTGACGATAAACCT
GGCGGCGATCTGCACGCCGGCGGACTACAACACGCGGCCGCTCGACACCATCTACAGCAA
CTTCATCGACGCGCTCCCGGTGGTCAAGTACTGCTCGGAGAACGGCAAGCGTCTGATCCA
CTTCTCCACGTGCGAGGTCTATGGCAAGACCATCGGCAGCTTCCTCCCCAAGGATCACCC
CCTCCGCAAGGAAGCTGAATTTTATGTGCTGACAGAAGATGAGTCACCCTGCATCTTTGG
TCCAATTGTGAAACAGAGATGGTCCTATGCGTGCGCAAAGCAGCTTATTGAAAGGCTTGT
TTTTGCTGAAGGCGCAGAAAATGGCCTTGATTTCACGATTGTGAGACCTTTCAATTGGAT
TGGGCCAAGGATGGACTTCATTCCTGGCGTTGATGGTCCTAGCGAGGGTGTTCCTCGGGT
TTTGGCTTGCTTCAGCAACAATCTCTTACGCAGAGAGCCCCTGAAGCTCGTTGATGGCGG
CGAGTCCCAGAGAACTTTTGTTTACATCAAGGATGCCATTGAAGCTGTTCTTCTGATGAT
TGAAAACCCTGCTCGAGCCAATGGTCATATCTTCAACGTTGGGAACCCTGACAATGAAGT
CACTGTTAGGGAGTTGGCTGAAATGATGACAGAGGTCTATGCTAAGGTCTCAGGAGAGCC
CCCGCTGGAGGAGCCTGTGATCGACGTGAGCGCGAAAGAATTCTACGGCGAAGGGTACGA
CGACAGCGACAAGAGGATCCCCGACATGACCCTGATCAACAAGCAGCTAGGGTGGAACCC
CAAGACCCCTCTCAAGGACCTGCTGGAGACGACTCTGACCTACCAGCACAAGACATACAA
GGAAGCCGTCAAGACACAGATGTGTCTGGCCACGGCGACGCCGTCAAGCTAGACGACGAC
GGCACGCCTGCCTCGGCCACGGCCCTCTTGATCTTTTGGAAGCCGGATACGGATGTCATA
GTGAAACCACCGTCGTCGTTTTTGTCGCGCCTCTAGATCCCACCACCCATCTCTTATCTT
ACCTAGATTCGTCGTTGTGTAACCCTATATCGGGCAAAAGGGACCGAGTATCTGAGTATC
TATCATACCTGTGGTGGCAGTGTTTGTTACGTTTGGTTGGTTGCACCTCCCGTGCTATTC
TTTTGCTGTTAGTAAGAGAGAGATATATGTTCTTGTTCGGCATAGTTGATGATGATGTGA
GATTACGGCCTGGCAAACTTTACTAGTTTTCAGCGTAGTTGATGTTGAGTTTTAAGCTTC
AACCCCTTTGGTTAGTGAGCTTCATTCAGTCACAGTAGTAATATGAACAATAATGGTACG
AATGATCTCTCTGGCTACATAGTGTGC

Homology of Contig TA33230_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g73790.1	399	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi2g61940.1	394
Arabidopsis v10	AT1G08200.1	389	\| Symbols: AXS2 \| UDP-D-apiose/UDP-D-xylose synthase 2 \| chr1:2574259-2576609 REVERSE LENGTH=389