- Probe CUST_639_PI390587928
- Source Contig U35_14074
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_639_PI390587928 | Hv_44K_v2 | CTGTTGAACTGCATCATTAGTACTTCGTGGAACAAGTATCTCGCTTAATTTGTTCAAAAA | 638 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52788.2 | 2256 | 9e-22 | 1618 - 1672 | 100 | 55 / 55 | plus | ABC00127 ABC00169 ABC00333 ABC00902 ABC00930 ABC50944 |
| Harvest21 | ABC00169 | 667 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus | ABC00169 |
| Harvest21 | ABC00674 | 1737 | 1e-23 | 1585 - 1645 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC50515 | 645 | 2e-22 | 106 - 160 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC38886 | 140 | 2e-22 | 29 - 83 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC29944 | 160 | 2e-22 | 56 - 110 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC00902 | 1661 | 2e-22 | 1568 - 1622 | 100 | 55 / 55 | plus | ABC00902 |
| Harvest35 | U35_14083 | 1685 | 3e-25 | 1585 - 1644 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14074 | 710 | 3e-25 | 639 - 698 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38629 | 693 | 2e-22 | 145 - 199 | 100 | 55 / 55 | minus | |
| Harvest35 | U35_14085 | 1470 | 2e-22 | 1311 - 1365 | 100 | 55 / 55 | plus |
Contig Sequence (710 bp)
>U35_14074 710 Hv_44K_v2 ACGAGCAGCTATCGGTGTCGGAGATCACCAACAGCGCGTTCGAGCCGTCGTCCATGATGG CCAAGTGTGACCCTCGCCACGGCAAGTACATGGCGTGCTGCCTCATGTACCGGGGCGACG TGGTGCCCAAGGACGTGAACGCGGCCGTTGCCACCATCAAGACCAAGCGCACCATCCAGT TCGTGGACTGGTGCCCCACGGGGTTCAAGTGCGGCATCAACTACCAGCCGCCCACTGTGG TGCCCGGCGGCGACCTGGCCAAGGTGCAGAGGGCCGTCTGCATGATCTCCAACTCCACCA GCGTTGTCGAGGTCTTCTCCCGCATTGACCACAAGTTCGACCTCATGTACGCCAAGCGCG CCTTCGTCCACTGGTACGTGGGCGAGGGCATGGAGGAGGGCGAGTTCTCGGAGGCCCGTG AGGACCTGGCCGCCCTGGAGAAGGACTACGAGGAGGTCGGCGCAGAGGGTGGCGACGACG AGGATGGCGAGGAGGACGACGACTACTGATCTGCTCGTCCGCTCGACGGAGGATCCGTCT CCTCTGCCGCCTATCTTTAACTACATATTGCTTTGCCGTCCTGTTTTGGGAACTTATGTG CTGGGTGAGGTTGTAAGCCATCGGTGCTTTCTATGTCGCTGTTGAACTGCATCATTAGTA CTTCGTGGAACAAGTATCTCGCTTAATTTGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_14074 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g51600.1 | 452 | 1e-100 | protein|tubulin/FtsZ domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g07160.1 | 452 | 2e-103 | |
| Arabidopsis v10 | AT4G14960.2 | 450 | 2e-101 | | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450 |