barSeed - Barley Seed Development Database

Probe CUST_6396_PI390587928

Source Contig U35_3823

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6396_PI390587928	Hv_44K_v2	AACTGATGTGCACACTGACTGGAAGAACCTCTTGTCAAGTGCTATCCAACTTTCAAAAAA	1411	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.144	1.266	1.040	1.001	0.506	0.555
Raw	554.306	940.034	688.301	1033.731	185.671	220.848

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9623.1	1322	5e-22	1114 - 1168	100	55 / 55	plus
Harvest35	U35_3823	1482	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1482 bp)

>U35_3823 1482 Hv_44K_v2
CGCTCTCCGCCTTCTCCGTCGCGCCGCAGCTGCTCTCCTCCGCCTTCCGCCGCCATGGGA
AGTACCAGCGCAAGGATCCCTCGAACGACGACGCGGACGCCTGCGGGGATGCTGGCTCTT
GCGCCGACGGCAGGTCAATTTTTGAGGGCAAGCATGATATTGTCACTGAGAAGGACCTAG
ATCACCTCGTGCAACTTTTAGATAATAAGGAGAGTGGGCGTACAACATGGCAGCATTTGA
TGGAGCGTACCACTTCCAACATGACGTACAAGGCCTGGAGGCATGAGCCCGAGGTGGGAC
CTATAATGCATTGTAGCCAGACCATATTTGAGGATGCTACTCCTGAACTGGTTAGAGATT
TCTTCTGGGATGATGATTTTCGTCTAAAGTGGGATCCCATGCTTGTGTGCTTCAAAACTT
TGGATGAGTTTTCTCAGAATGGAACCACAATTATTCACTGGATTAAAAAGTTCCCTTTCT
TCTGCAGTGACCGTGAATACATTTTTGGGCGGCGTATCTGGGAGTCGGGGAAGGCTTACT
ATTGTGTTACGAAGGGAGTTCCTTATCCATCTTTGCCCAAGAAGGAAAAACCGCGGCGTG
TGGAATTGTACTTCTCGAGTTGGCGTATTAGACCTGTTCAATCGCCCAAACAAGATGGGC
AGCAACCCATGGCATGTGAAGTAACTCTGTTTCACTATGAGGACATGGGCATACCGAAGG
ATGTTGCTAAAGTTGGTGTCCGCCACGGCATGTGGGGTGCTGTTAAAAAGCTGCAGTCCG
GCTTTAGAGCATATCAGCTAATGAGAAAATCAGAACACATACTGTCACACAGTGCCATCA
TGGCTCGGGTGACCACCAAGACATGCATTGCTGGTTCTGATGGCTCCTTGGATCAATGGC
CCTCCAGCACAGAACAAGCGAGCACAGAGGACTACAACTCCAGGGCAGTCCAACATGGTT
TCAACTGGAAGTGGGTGGTGGTCGGTAGCACAGTGGCTGCAGTCTGCGTGCTTAACACCG
GAATTGTAGGGAAGGCCCTCTTACTTGGAGCTGCAAGAAGGCAGGCAAAGAAGTGTTGAG
CATCTACCAGCATCCACAAGAGAGCTTCACGGCCATCAGGGCCTGTCTCTGTGTAGAAAG
TTGCAATCGAGACCGGGATAAAGGAATGAGATTCATACCATACTACACGTTGCAGATATT
TCGGGTGCCTTTGGATTGTGTCTTGTAAGCAGTATCGCAAATGTGTCTTGCCATAACCGA
TTATGTGGTATCAGGAATCGTTAGACGATGATGTATCTGAAGATATATGAGGTTTGTTAA
CAACATTTGCCAGCTTCCAAGTTCCAAGAGTGCATTTTTCAGCGCTGTACCTGATGTTAA
ACCATGCTAACGATTATGTCGTGTGGTGCTGAACTGATGTGCACACTGACTGGAAGAACC
TCTTGTCAAGTGCTATCCAACTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08760.1	443	0.0	protein\|START domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g55230.1	441	0.0
Arabidopsis v10	AT4G14500.1	433	2e-125	Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr4:8334391-8337022 FORWARD LENGTH=433