barSeed - Barley Seed Development Database

Probe CUST_6390_PI390587928

Source Contig U35_3829

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6390_PI390587928	Hv_44K_v2	TTGAAGATGATCATCCATTGCTCAGTTCTGATTCAAACTGATATTTCCCAGACCAAAAAA	1556	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.611	1.552	0.942	0.946	0.580	0.731
Raw	130.038	194.663	105.705	160.389	35.517	48.581

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25330.1	851	1e-22	781 - 836	100	56 / 56	plus
Harvest21	ABC08405	1623	3e-25	1557 - 1616	100	60 / 60	plus	ABC08405
Harvest35	U35_3829	1623	3e-25	1557 - 1616	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_3829 1623 Hv_44K_v2
GGACAATCCGGCCAACGCAGCCATGCGCCCGCTTATCCGAACCGCCTGCCTCCGCGCTCG
TGTCCGCGCCATGGCCACGCTTCCAACCACCACCGCCGCCGCCTTCTCTTCCACACGCGC
CCCTTTCCCATGCTCCTCTCCTTCGCCCGCCCGTCGACTGCTCGTCGCCACCCGCCTCCT
CCCCTCCGCGCCGGCGGCGGCGGCGGCAGGGGCACGAACCCTCCGGACCTCCGCGGCGGC
GGCGGAGGCCGCCGTCGAGGTGGGTGGCGTCAAGATCGCGCGAGAAGATGTCGTCAAGGA
GGATGACCCGACGAACAATGTGCCAGACACCATTTATTCTAAAATTGGCCTTCAGCTGCA
CAGGAGGGATAACCACCCTCTAGGGATTCTCAAGAATACTATCTACGATTACTTTGACAA
AAGTTTTCCTAGCCAGTTTGTCAAGTTCGATGACCTCTGCCCTCTTGTTTCTACTAAGCA
GAACTTTGATGATGTCTTGGTCCCTGCCGACCACGTAAGCCGGAGTTACAATGACACATA
CTATGTCGATGCTCAAACAGTCTTGAGGTGTCATACCAGCGCTCATCAAGCAGAGCTGCT
AAGAGAAGGGCATACACACTTTCTTGTAATTGGAGATGTTTATCGTAGGGATTCTATTGA
TTCAACTCATTACCCTGTCTTCCATCAGATGGAAGGCTTTCGTGTCTTCTCTCCAGATGA
CTGGTCAGGCTCCGGCATGGATGGGACAGCATATGCAGCTACAGACCTCAAGAAAACACT
GGAAGGCTTGGCAACACATTTATTTGGTGCTGTGGAGATGCGCTGGGTTGATACTTACTT
CCCATTCACCAACCCATCCTTTGAACTCGAAATATATTTTCAGGGTGACTGGTTGGAAGT
TTTGGGATGTGGGGTCACTGAGCAGGAAATTTTGAAAAGCAATGGTAGGACAGATCATGT
TGCATGGGCCTTCGGACTAGGCTTGGAGCGACTAGCAATGGTCCTCTTTGATATTCCAGA
TATTCGGCTGTTCTGGTCAAATGATCAGCGGTTCACATCCCAGTTCTCTAAGGGCAAGCT
TGGGGTCAAGTTCAAGCCATTCTCGAAGTTTCCACCCTGTTACAAGGATATGAGTTTCTG
GATAAATGATGAATTTACAGAGAACAATTTATGCGAGGTTGTTAGAGGCATTGCTGGAGA
TCTTGTAGAGGAGGTAAAACTAATAGACAATTTCACAAACAAGAAAGGCATGACGAGTCA
TTGCTACAGGATAGCCTATAGGTCAATGGAACGTTCGCTCACAGACGAGGAGATCAACGA
CATGCAGTGGAACGTAAGGGAAGAGGTGAAAAGTAAATTGAGAGTTGAGCTGAGATAAAA
CGGAGCTAGCTCGTGTTCTTTGTATGTAAATTTATTGAGAAGCATATTAATATATGAAGA
AAAACGGGGGCCATTTTGCTCTTGTAATAACCCACGTCTTGTGTTCTTTTTTTTCAATGA
AGGCGAAAAACCCCTTCGCATAGTTAGCACGTTACATTTTGCTGGATTCCAGCCATTTGA
AGATGATCATCCATTGCTCAGTTCTGATTCAAACTGATATTTCCCAGACCAAAAAAAAAA
AAA

Homology of Contig U35_3829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g34860.1	449	protein\|phenylalanyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi4g05930.1	452
Arabidopsis v10	AT3G58140.1	429	phenylalanyl-tRNA synthetase class IIc family protein \| chr3:21529988-21532386 REVERSE LENGTH=429