barSeed - Barley Seed Development Database

Probe CUST_6389_PI390587928

Source Contig U35_3830

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6389_PI390587928	Hv_44K_v2	GGTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTATAGAATTTTGT	1751	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366148	4863	2e-24	1421 - 1480	100	60 / 60	minus	ABC08503 ABC10956 ABC35217
MLOC	MLOC_16724.1	2380	2e-24	1737 - 1796	100	60 / 60	plus	ABC08503
MLOC	MLOC_16724.2	2293	2e-24	1650 - 1709	100	60 / 60	plus	ABC08503
MLOC	MLOC_16724.3	2502	2e-24	1859 - 1918	100	60 / 60	plus	ABC08503
JLOC1	JLOC1_11539.9	1756	8e-25	1546 - 1605	100	60 / 60	plus
JLOC1	JLOC1_11539.8	1829	8e-25	1619 - 1678	100	60 / 60	plus
JLOC1	JLOC1_11539.7	2137	8e-25	1927 - 1986	100	60 / 60	plus
JLOC1	JLOC1_11539.6	1919	8e-25	1709 - 1768	100	60 / 60	plus
JLOC1	JLOC1_11539.5	2054	8e-25	1844 - 1903	100	60 / 60	plus
JLOC1	JLOC1_11539.4	1841	8e-25	1631 - 1690	100	60 / 60	plus
JLOC1	JLOC1_11539.3	1932	8e-25	1722 - 1781	100	60 / 60	plus
JLOC1	JLOC1_11539.2	1845	8e-25	1635 - 1694	100	60 / 60	plus
JLOC1	JLOC1_11539.1	1722	8e-25	1512 - 1571	100	60 / 60	plus
Harvest21	ABC08503	1849	3e-25	1752 - 1811	100	60 / 60	plus	ABC08503
Harvest35	U35_3830	1879	3e-25	1752 - 1811	100	60 / 60	plus

Contig Sequence (1879 bp)

>U35_3830 1879 Hv_44K_v2
CTCTCTGCCTGCCTGCGCGCACCGGTCTCCCCCCCCCCCCCCCTCCTCTCTTCCTCCGTC
CGCCTCCGCCTCCGGGAGAGGCCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTAC
CCGCGCCAGCATCGCCTCGATCCGTGTTGTACTCCTTGACCGACTATGGCTTTTATCAAT
TCAAAGTCAGATTCATTCCAAGCCTTCCGTCTAAAACATAACTTAGACAGTTTTGGCAGT
CTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGAAGTTTGATGATGACATTT
TCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAATCTCGCCTTCCCAAGTTG
ATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGGACCCTCAGGATGAGCCTG
AGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAGAATTTTCCGGTTTGCATG
CTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAATATCTGAAACTGTGGTTC
CACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATGGCAAATCTCAGTCAAATG
TAGTGAACACCGGTGATAAAGAGTTTGCAGATGAAGATGTAAATTCTGCAGCACAAGATA
TCTGTACTGTCAATGATCATGAGAAAAGCCTGGGCTCAAACCCGGATTGCAGCCTGTTGG
ATATTTATAATCCTGATGATGCTTTTCCTTTCTTATTTGATGTTCCAACTGGTCTCCTGG
CTAGCTACAGTACATTTTGTGATGAATTTGTACCCATCGATTCATTGACAGACATGAGTG
GCATATGCGGAGTATTTCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAAC
CATGCCCATCACAAGGGGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATT
CTGAGGTTTTAGAGTGGTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTG
GTTATACCGAGTTGAGCTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGG
TCACTCTTGTGCTTGATTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATG
ATGCAGATTTTTCTTTTCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGA
AGAGACCACATTTGCATATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATAT
TCACAGCCAGCCAAAGTGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACA
CATTGTTCTCGAAGCGTTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAA
AAGATCTGACTGTTATTGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGC
AGGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCT
TTGATGAGGGATTATCTCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACG
TCCGACCCATAATTGCCAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAG
CAGGTGTTAGGAAGAGTTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACA
TTGACCGAGCTAGTTGAGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGA
TCAAGAATTTTGGTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTA
TAGAATTTTGTACATAAAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTCTTCTTG
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47540.1	440	0.0	protein\|NLI interacting factor-like phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g45880.1	448	0.0
Arabidopsis v10	AT5G46410.2	456	5e-67	\| Symbols: SSP4 \| SCP1-like small phosphatase 4 \| chr5:18826007-18828156 FORWARD LENGTH=456