barSeed - Barley Seed Development Database

Probe CUST_6384_PI390587928

Source Contig U35_3835

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6384_PI390587928	Hv_44K_v2	GTGGTTGTCTTAGTTGTATCTTGTATGCTGTTAACTGTGCTTCTCAAGTTTGTAACTCTT	635	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375065	3082	2e-24	2953 - 3012	100	60 / 60	plus	ABC15448 ABC17887
MLOC	MLOC_12102.2	2191	2e-24	92 - 151	100	60 / 60	minus	ABC15448 ABC17887
MLOC	MLOC_12102.1	2116	2e-24	95 - 154	100	60 / 60	minus	ABC15448 ABC17887
MLOC	MLOC_12102.3	2175	2e-24	81 - 140	100	60 / 60	minus	ABC15448 ABC17887
MLOC	MLOC_12102.4	2240	2e-24	81 - 140	100	60 / 60	minus	ABC15448 ABC17887
JLOC1	JLOC1_8098.4	1819	8e-25	1563 - 1622	100	60 / 60	plus
JLOC1	JLOC1_8098.3	1957	8e-25	1701 - 1760	100	60 / 60	plus
JLOC1	JLOC1_8098.2	2726	8e-25	2470 - 2529	100	60 / 60	plus
JLOC1	JLOC1_8098.1	1835	8e-25	1579 - 1638	100	60 / 60	plus
Harvest21	ABC17887	755	3e-25	636 - 695	100	60 / 60	plus	ABC17887
Harvest35	U35_3835	755	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_3835 755 Hv_44K_v2
GGTTGGAGCATTAATAATGGTAGTTGCCTGACCTGTGTCAAGGTTTTTAAGGGAGGTGTC
ACTCAGATGAGATTTCAACCCCGCAAAGGAAAATATCTAGCAGCTGCATCTGAGAAGGCT
ATCTACGTACTTGATGGGGAGACGCAGCATGCTTGTAGAAACCCTTTACAGGGTCATGCA
AAGGACATTCAGTCAGTTTGTTGGGACTCTGCGGGTGATTATCTCGCTTCTGTCAGTGAA
GATGCTGTTAGAATATGGTCATTTACTTCTGGGCATGACGGTGAATTTGTGAATGAGTTG
AACTGCAGTGGAAACAAGTTCCAAACATGTGTTTTCCATCCAGCTCACCCTTCCTTGCTA
GTCATTGGTTGTTACGAGTCGTTGGAACTTTGGGACATCAGGGAGAAGAATGCCATGACC
TTGAACAATGCTCATGACGGTTTAATTGCAGCCCTAGCAGCGTCGAGCGCAACAGGCAAG
GTTGCCTCAGTTAGTCATGACAGGCTTGTCAAGCTCTGGAAATGACTTGTAAAATAGTGA
CTTCTACATTCTGTTGCTAGATTTTTATAGAGGACAGGATGGTTCAGATAACCACATGAC
AAGAAGGTAGCTAACAAAAGGCAGGTTTGCGATTTGTGGTTGTCTTAGTTGTATCTTGTA
TGCTGTTAACTGTGCTTCTCAAGTTTGTAACTCTTTATAGAATAGGCTGATTGCCTGCTG
TAACTTAACAATGGAGACTTTGTGCTGCATTAAAA

Homology of Contig U35_3835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42260.2	876	1e-96	protein\|transcriptional corepressor LEUNIG, putative, expressed
Brachypodium v1_2	Bradi2g43077.1	878	3e-106
Arabidopsis v10	AT4G32551.2	969	5e-66	\| Symbols: LUG \| LisH dimerisation motif;WD40/YVTN repeat-like-containing domain \| chr4:15707863-15713359 FORWARD LENGTH=969