barSeed - Barley Seed Development Database

Probe CUST_637_PI390587928

Source Contig U35_14076

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_637_PI390587928	Hv_44K_v2	TACAGCAGACTTGTGCCGTCTTCACTCCCGGGTCGAAGTTACCCGAATGGATGACATCCG	508	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.327	1.808	2.621	3.638
Raw	21.061	93.284	8834.077	72553.700	37894.733	57629.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65022.1	902	2e-24	277 - 336	100	60 / 60	plus	ABC00257 ABC00821 ABC32619
JLOC1	JLOC1_42752.1	993	8e-25	368 - 427	100	60 / 60	plus
Harvest21	ABC00821	2122	3e-25	873 - 932	100	60 / 60	plus	ABC00821
Harvest21	ABC00513	596	3e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC00257	795	3e-25	232 - 291	100	60 / 60	plus	ABC00257
Harvest35	U35_14078	2121	3e-25	873 - 932	100	60 / 60	plus
Harvest35	U35_14076	596	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_14076 596 Hv_44K_v2
ATCTTTGCACTCCTCGCCATTGTGGCAACAACTACCAGCAACAGCAACAACAAGAAGAGC
AACAACAACAACACCACCAACACCACCAACAGCAACAACAACAACAGCAACAGCAACAGC
AACAACAACACCAACAACAGCAACAACAACAACAACAACAGCAACAACAACAACAACAAC
AACAACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTAC
AACAACAACAACAACAACAACAGCAACAACAACAGCAACAACAGCAACAACAACAGCAAC
AACAGCAACAACAACAGCAACAACCACCAACGAACCTGCAGACTCAGCTAGGACAATATG
GCGTGCAAGTCCAGCCGCAGTCTCCTCCTCTTGGCCACCGTCATGGTCTCCGTCTTCGCC
GCCGCTGCCGCTGCCGCCGCCGCCACCGACTGCTCCCCAGGGGTGGCTTTTCCGACCAAT
CTGCTCGGACACTGCCGCGACTATGTGTTACAGCAGACTTGTGCCGTCTTCACTCCCGGG
TCGAAGTTACCCGAATGGATGACATCCGCGGAGCTGAACTACCCCGGGCAGCCATA

Homology of Contig U35_14076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None