barSeed - Barley Seed Development Database

Probe CUST_6379_PI390587928

Source Contig U35_3840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6379_PI390587928	Hv_44K_v2	GTTGTGAAATAAGACCCGTGACAGTTCATTTATTGGTGTATTCAACACTAGCTTGAAAAA	1283	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	21.584	10.552	1.509	0.520	0.264	0.395
Raw	1526.467	1100.248	141.962	79.580	13.877	23.136

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54933.2	999	3e-22	501 - 556	100	56 / 56	minus	None
MLOC	MLOC_54933.3	2358	3e-22	231 - 286	100	56 / 56	minus	None
MLOC	MLOC_54932.1	5607	3e-22	366 - 421	100	56 / 56	minus	ABC09200
MLOC	MLOC_54933.1	2626	3e-22	342 - 397	100	56 / 56	minus	None
JLOC1	JLOC1_35387.1	3746	1e-22	1463 - 1518	100	56 / 56	minus
JLOC1	JLOC1_35389.1	3208	1e-22	1483 - 1538	100	56 / 56	plus
Harvest21	ABC01261	2076	5e-23	738 - 793	100	56 / 56	minus
Harvest35	U35_3840	1357	3e-25	1284 - 1343	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_3840 1357 Hv_44K_v2
TGCACGCGAAACACACGAGGAAAATAATTAGGCGAAAAGCTCGTTGCCGGCGAAGCTTTC
AACCCTGGCTGCCATGTGTGGCTGGTGCTGCTGCCTCGACCTCGAGTGCATCCATAACAT
CCCGCCCCTCAGTCTCCTCTTCCTCCACTTCTCCTCGGCTCCATCAACGGGAAGGGAGGG
GATAGCAGAACGTGCTCCCTCCATGGCCTCCATCTCGGTCCCGGACCCCGTCCCTTCCCC
GACCGAGGACGCAGAGAACATAAGAAAGGCGGTACAAGGGTGGGGGACGGACGAGAATGC
GCTGATCGAGATCCTAGGCCACCGGACGGCGGCGCAGCGCGCGGAGATCGCCGTGGCCTA
CGAGGGCCTCAACGACAAGACCCTCCTCCGCACGCTCCAAGACGAGCTCTCCGGCCACTT
CAAGGGCGCCATGACGCTGTGGGCGATGGACCCGGTGGCGCGGGACGCCAAGCTGGCCTA
CAAGGCCCTGAGGAAGAAGGGCGGCGACCGGCACGCCTGGGTGCTCATCGAGGTGGCCTG
CGCGTCGTCGCCGGACCACCTCGTCGCCGTCAGGAAGGCCTACTGCTCCGCCTACGACTC
GTCCCTCGAGGAGGACGTCGCCGCCTGCTCGCTCTACAAGGAACCCCTCAAGCAGTTCCT
GGTGCGGTTGGTGAGCTCGTACCGCTACGCCGGCGACCTCGTCGACGGCGAGCTGGCGAG
GGCGGAGGCGGCCGAGCTGCACGGCGCGGTGGCGGCCAAGAAGCAGCCGCTGCACGGGGA
CGTGGTGCGCATCGTCAGCTCCAGGAGCAAGCCGCAGCTCAAGGCCACGTTCGAGCACTA
CAAGCGACAGCACGGCAAGCCCATCCACGAGGTTCTCGAGGGGAACCGGAATGACCAGCT
CTCGGCCATGCTGAAAACTGCGGTTTGGTGCTTGACATCGCCGGAGAAACATTTCGCAGA
GGTGATCCGGACCTCGATCATAGGGCTCGGCACCGACGAGGAGTCGCTGACCAGAGCCAT
CGTCTCGCGCGCGGAGGTCGACATGAAGAAAGTCAAGGAGGAATACAAGGTGAGGTACAA
GACGACGGTGACCAAGGACGTCGTCGGCGACACTTCCGGGTACTACCAGGGCATCCTGCT
CACCCTCATCGGGCCAGAGTAGCCATTGCCAGGATCATGCAAGCTCAGAGGATGATGTTC
AATGGCATATTGCTTTAGTACTTTGCTGGTTTGATTGAGCAGAGTGGCACTGCCGTGTGT
ACAATCTAGAGTGAAGTGTTGGTGTTGTGAAATAAGACCCGTGACAGTTCATTTATTGGT
GTATTCAACACTAGCTTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_3840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31760.1	373	5e-144	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi2g26770.1	370	8e-175
Arabidopsis v10	AT2G38760.1	321	5e-74	\| Symbols: ANNAT3, ANN3 \| annexin 3 \| chr2:16201086-16202490 FORWARD LENGTH=321