barSeed - Barley Seed Development Database

Probe CUST_6376_PI390587928

Source Contig U35_3843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6376_PI390587928	Hv_44K_v2	TGCCTTTTGGTGCTGTAAACTTGATCAGTAATATACGTGCTCTCCTTTCCTGCCAAAAAA	1002	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.254	1.412	1.200	0.838	0.428	0.464
Raw	3928.793	6885.993	5174.133	5584.097	1010.786	1195.446

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362627	1921	3e-21	1868 - 1921	100	54 / 54	plus	ABC08682
MLOC	MLOC_20682.1	865	3e-21	243 - 296	100	54 / 54	minus	ABC08682
JLOC1	JLOC1_14340.1	745	2e-21	124 - 177	100	54 / 54	minus
Harvest21	ABC08682	1110	3e-25	1003 - 1062	100	60 / 60	plus	ABC08682
Harvest35	U35_3843	1110	3e-25	1003 - 1062	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_3843 1110 Hv_44K_v2
TACAGGATGCCTCAAAGTGTGCTCTCCGCATTCTTGAGAATGTGCCACCTGTGGCATTAA
ATGATGACAGAGTTGTTGAGATACAGGGTGAACCTCATGATGTTCACAAAGCAGTGGAAC
TGATTGCAAACCATTTGAGAAAGTTTCTTGTTGACCGTAGTGTTCTCCCTTTATTCGAAA
TGCAGATGAAAGTGCACAGTGCGCCCAGAGAGCAACCTATGCCTGCTCCTCAGCAGTGGG
GTCCTCCTCCACCCTGGAGTCATCCACCAAACATTCCTCCCAGTGGCCCAGGTTATGGCG
GGAACCCACATTTTATGCCGCCAAGGCCACAAGACAGCTATTATCCTCCTCCTAATGTGC
ACCATGTGGAAAAACAACCGCACTATGGGATTTCTTCATATGGACGTGATGCAAATCCAA
CTGCTGCTCCTACCTCAGGGAATCAACACCTATCGCATGGGTCTTCTCAACTTTCGCAAA
AGATGCAAGTTCCTCTTTCCTATGCTGATGCTGTGATTGGGTCTGCTGGTGCCAATATTA
GCTACATCCGCAAGCATAGTGGTGCAACAATAAGTATTCAAGAAGGTGTTCCTGGGGAGA
TGACGGTCGAGATTGCAGGAAGTGCCTCACAAGTTCAAACTGCTCAGCAGCTGATCAAGA
ATTTCATGGCCGAAGCCTCTCCCCAAGTTCCTCCACCAGGTCCCGCTCCTCCCTCCCAAC
CAGTTGACTCGGGCTACAACTCATACGCGCCGTATGGAGGACCCTCGTATGCAACTCCAC
CAGGGGGCGCAGGTCCTACCCCTCACAATGGAGGAGGCTATGGGGCACATTACCCACCGA
ACTACGGGTACTAGCTGGACATGAAACACTAGGATTAGTGACGAACTTGGTTTTGTTGTT
CGGCCTGCCGATTTGTGGAGCACGTGAGACAATTACTAGCATTTCTGAACTGTCGGTGGT
GTAATCTGTCGAGCACAAATGTTCTCTTATGTGCTGTTTAGTTGCCTTTTGGTGCTGTAA
ACTTGATCAGTAATATACGTGCTCTCCTTTCCTGCCAAAAAAAAAAAAAAAAAAGTATCC
AAGGTCCATGTACACAGGCAGTACATAAGG

Homology of Contig U35_3843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40560.2	356	3e-87	protein\|KH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g02690.1	528	1e-85
Arabidopsis v10	None