barSeed - Barley Seed Development Database

Probe CUST_6370_PI390587928

Source Contig U35_3850

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6370_PI390587928	Hv_44K_v2	CTGTTTGTTGAAGACACCCAGGCTTATTATGGGGTAAACATGAATGCCTTGACAAAGGCA	658	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36734.1	1480	2e-24	677 - 736	100	60 / 60	plus	ABC14329
MLOC	MLOC_36734.2	1352	2e-24	561 - 620	100	60 / 60	plus	ABC14329
JLOC1	JLOC1_23698.1	1422	8e-25	578 - 637	100	60 / 60	plus
Harvest21	ABC08755	718	3e-25	659 - 718	100	60 / 60	plus
Harvest35	U35_3850	718	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_3850 718 Hv_44K_v2
ACCGCACGAAAACCCCTCCCGTCTCTCCTCCTCTCCCGCCTCCCCCCCACCCCTCCCCAT
GGCGTCCCCCCCCAACGGCGCCGCCGCCGCCGCCGCCTCGGCCGCCGGGGGCGCGCCACC
CGTCGACAAGGAGGTCGACTTCGCCAACTACTTCTGCACCTACGCCTACCTCTACCACCA
GAAGGAGATGCTCTGCGACCGCGTCCGCATGGACGCCTACCACTCCGCCGTCTTCCGCAA
CCCCCACCACTTCCGCGGCAAGGTGGTTCTTGACGTCGGCACCGGGAGCGGCATCCTCGC
CATCTGGAGCGCTCAGGCCGGCGCCAGGAAGGTGTACGCCGTCGAGGCCACCAACGTGGC
GGAGCACGCCCGCGAGCTCGTCCGCGCCAACGGGGTCGCCGACATCGTCGAGGTCATACA
GGGGACCATGGAGGACATTGTGCTGCCGGAGAAAGTTGATGTCATTATCTCTGAGTGGAT
GGGGTACTATCTCCTGAGAGAGTCCATGTTTGATTCCGTCATATGCGCACGTGACCGTTG
GTTGAATCCAGGTGGTGTAATGTATCCTAGTCATGCTCGGATGTGGTTAGCACCGATAAG
AAGTGGGCTGGGTGACAAAAAGATGGAAGATTTTGAGCATGCCATGAATGACTGGAATCT
GTTTGTTGAAGACACCCAGGCTTATTATGGGGTAAACATGAATGCCTTGACAAAGGCA

Homology of Contig U35_3850 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05090.1	381	9e-129	protein\|methyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g51130.2	381	6e-142
Arabidopsis v10	AT1G04870.2	383	3e-105	\| Symbols: PRMT10, ATPRMT10 \| protein arginine methyltransferase 10 \| chr1:1373485-1375598 REVERSE LENGTH=383