barSeed - Barley Seed Development Database

Probe CUST_6362_PI390587928

Source Contig U35_3858

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6362_PI390587928	Hv_44K_v2	CTGCTGATCTACGTGGTCTCGTTGCCATGTTGAATGATCACTACTTATGCTGTGAAAAAA	1816	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.846	1.599	1.035	0.836	0.408	0.487
Raw	4166.810	5748.500	3254.953	4256.303	701.486	912.981

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08352	568	3e-25	498 - 557	100	60 / 60	plus	ABC08352
Harvest35	U35_3858	1887	3e-25	1817 - 1876	100	60 / 60	plus

Contig Sequence (1887 bp)

>U35_3858 1887 Hv_44K_v2
TTCCCCCTTCCCCTCCTCCACGGCAGCTTCTCCTCCTCCTCCTCGCCGGCGGCTCCCTCC
ACCAGCACCGGCCCCGCCGCCGCGATGCTCCGGCTCCGCTCCTCCGCCCGCCTACTCCGC
AAGCTGCGCGAGGCGTCCCGGCCGCTTGAGGTCCAAAGAGTGCCGACGACGACGACGACG
CGGTGGCTCTCCGGCGCAGCCTCGGCCGCGCGCTCGACCTCGCTGCTGCGCCCCCTGCCG
GGGCTCGACCTCCCGCCCTGCCTCCCCGACCAGCTCGCCCGCCTCCCCACCCGCATCACC
ACGCTCCCCAACGGCGTCCGCGTCGCCTCCGAGGACGTCCCGGGCCCGTCGGCGTGCGTG
GGGGTGTTCGTGGCGTCGGGCTCGGTCCACGAGTCGCCCGAGTCCGCCGGCGTGACGCAC
CTGCTGGAGAAACTGGCGTTGAAGGACACGGCGCACCGGAGCCACATGCAGATCGTGCAG
GAGGTGGAGGCCACAGGGGGCAATGTCGGCGCCTCCGCCTCCAGGGAGCAGATGGTCTAC
AGCTACGACACGCTCAAGGCCTACATACCGCAGGCCATCGAGGTGCTCCTCGACAGTGTC
CGCAACCCGCTCTTCCTCCAGGACGAAGTCGACCGGCAGCTGGCCCTTACTCGAGAGGAG
GTCCAGGAGGTGCAGAAGAACCCTGAGAAGTTTCTTCCGGAAGTGCTTAACCTTGTTGGG
TACGAGGGGGCGATCGCGAAGCCGCTGATAGCTCCTGAGGAGGCTCTTGGGATCATCAAT
GCCGATATTATTCAGAAGTTCTATCATGAAAACTTCACAGCTGATCGTGTGGTTCTAGCA
GCGTCAGGTGTTGATCATCAGCACTTGTTAGATGTCGCAGAACCTTTGTTGTCTGATTGG
CACAAGGGCCCCCCTATGGAAACACCAAAGTCTACGTATACAGGTGGTGACTTCAGACGC
AAAGCAGAATCAGATATGACACATGTTGCGTTGGCTTTTGAAGTGCCAGGCGGCTGGCTT
AAAGAGAGAGATGCTACGATTATGACTGTCATACAGACCTTAATGGGCGGTGGCGGCTCA
TTCTCCTCTGGTGGTCCCGGAAAAGGGATGCATTCACGGCTTTACCTGAGAGTCCTAACT
AAATATCACGACGTCCAAGCATTTTCAGCATTCAGTAATCTATATGATAATACTGGCCTC
TTTGGTATCTATTTGACAACGCCACCATATTTTGTTGCAAAGGCTGTTGATGTCGCGGTG
CAGGAATTGATTGCTATTGCAACGCCTGGACAAGTGACGGAGGTTGAGCTGAGACGTGCG
AAAAACTCGACGATTTCATCCGTGTTAATGAATCTTGAATCAAGGGTGATTGTTGCAGAA
GATATAGGGCGACAGCTTTTGACTTATGGTTGCAGGAAGCCTATCGATCATTTTCTTCAG
TGTATGGATGAACTGACCCTAAATGACGTCACATCGTTTTCTAAGATGTTGTTATCTTCC
CAACCCACAATGGCTAGCTATGGAGACGTTGATAAAGTTCCTCCGTACGAATTTGTTAGC
AAGCGGTTGCAACGTTTCCGATAGGGCGACCGAACACCATGATCTCTTGTGAAGATGAAG
ACATGTAGCTCTAGCCTTGATTCCAGTTCTCCTTGCATTTGGGCGTGGTGCTCGGACAAT
CTTTTGTTTTAATACTCACTCATGTGATGAATCAGTGAGGTTAGGTTTGTAGTAGCCTAG
TTCAAACAGCAGATGCAGAAGAAATTTCTCAGCTAGACAGGAATACGTTTTTTAAAAACT
TGTATGCAAATTTTGTCTGCTGATCTACGTGGTCTCGTTGCCATGTTGAATGATCACTAC
TTATGCTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73550.1	491	0.0	protein\|mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g61800.1	490	0.0
Arabidopsis v10	AT1G51980.1	503	2e-143	Insulinase (Peptidase family M16) protein \| chr1:19323692-19326771 REVERSE LENGTH=503