barSeed - Barley Seed Development Database

Probe CUST_6357_PI390587928

Source Contig U35_3864

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6357_PI390587928	Hv_44K_v2	GTGCGAAACCATTTAGGTCTTGTATACAGTGCATGGTGCTTAGTAAAATAAACCAATTTT	1291	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.338	1.490	1.027	0.907	0.401	0.422
Raw	3390.360	5781.430	3523.673	4910.117	762.549	858.169

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53018.1	2578	3e-22	21 - 79	98	59 / 60	minus	ABC07960
JLOC1	JLOC1_34019.2	2407	1e-22	2255 - 2313	98	59 / 60	plus
JLOC1	JLOC1_34019.1	2653	1e-22	2501 - 2559	98	59 / 60	plus
Harvest21	ABC07960	1417	3e-25	1295 - 1354	100	60 / 60	plus	ABC07960
Harvest35	U35_3864	1423	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1423 bp)

>U35_3864 1423 Hv_44K_v2
GGTTGATTTGTCGGAAAGCATGCAAAATGACCATAAGAAAAAGAGCACAAAGAAATCACT
CAAGGATGTTGCCACGGAGAATGAATTTGAAAAGAGGCTTCTTAGTGATGTTATCCCTCC
AGATGAGATAGGTGTTTCCTTTGATGACATTGGAGCACTAGAGAATGTCAAGGAAACTTT
GAAGGAATTAGTGATGCTTCCATTGCAAAGGCCAGAGTTGTTCTCCAAGGGACAACTTAT
GAAGCCATGTAAAGGAATATTGCTTTTTGGTCCACCTGGTACGGGGAAGACCATGCTTGC
TAAAGCTGTTGCAACGGAGGCTGGTGCTAACTTCATCAACATATCAATGTCAAGCATTGG
CTCGAAGTGGTTTGGCGAGGGGGAAAAATATGTTAAAGCTGTGTTTTCACTTGCAAGCAA
AATTGCTCCCAGTGTCATTTTTGTGGATGAGGTTGACGGTATGCTGGGTAGACGTGAAAA
CCCGGGGGAACATGAAGCCATGCGTAAGATGAAAAATGAATTTATGGTGAACTGGGATGG
TCTGAGAACAAAAGACAAAGAACGTGTATTAGTACTTGCTGCCACTAATAGGCCGTTTGA
TCTTGATGAGGCTGTTATTAGGAGGCTCCCAAGGAGGTTGATGGTGAATTTACCAGACGC
AACCAATAGGAAAAAAATTATTAGTGTAATACTAGCCAAAGAAGATTTGGCCGAAGATGT
AGATCTAGAAGCAGTGGCCAGCTTGACTGAGGGGTATTCAGGCAGTGATCTGAAGAATCT
GTGTATTACCGCTGCACATCGTCCCATAAGGGAAATCCTTGACAAAGAGAAGAAGGAGAG
ACTCTTAGCAGAAGCAGAAAACAAACCATTGCCTCCTAAGTATTCTAGCAGTGATGTCCG
TCCTCTAAATATGAGTGATCTCAAACAGGCACACGAGCAGGTATGTGCAAGTATATCATC
TGATTCGACAAATATGAACGAGCTTGTTCAGTGGAACGAGCTTTACGGTGAAGGCGGATC
TAGAAAGAAGACACCTCTAAGCTACTTCATGTAGTTTATGTGTAGTCTGTACATAGAACA
GAAACATTATAGTGAAGCGGACTGAGAAGATAGACAATGAATAGCTCTGTTGGTTTCTTC
ATTCATAGGCAATTTTTTGAGTCAATTGTTCTGTAATGCCAGTTCGGAGTTTCGACAGAT
AGCAATAGCATAGGATCTGGTTGGTCCTTGAACGGTCAAACCTGTATGTAGACTCATCAG
AATACAGTTCACTTAATTGATGTTCCAGCCAGTGCGAAACCATTTAGGTCTTGTATACAG
TGCATGGTGCTTAGTAAAATAAACCAATTTTTTTCAACTACGAGTAAGGGATGCCTAATT
AAGCATCTATTCTTTACAAAAAAAAAAAAATTTTTTGAAAAAA

Homology of Contig U35_3864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g47530.1	1082	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g18160.1	1099
Arabidopsis v10	AT4G02480.1	1265	AAA-type ATPase family protein \| chr4:1082082-1088680 REVERSE LENGTH=1265