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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6352_PI390587928Hv_44K_v2GTGATCATGTCTACATCACGCTTGCTAAATCTAATAATAGAAGTAAAACGGTTTCAGGAA737GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 10.0076.1351.0050.7670.9350.837
Raw 73.90876.2529.88811.1213.1733.772



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK250120.19002e-24824 - 88310060 / 60plus ABC09125
MLOCMLOC_16980.135602e-242602 - 266110060 / 60minus ABC09125
JLOC1JLOC1_11726.117848e-25865 - 92410060 / 60plus
Harvest21ABC091257633e-25689 - 74810060 / 60plusABC09125
Harvest35U35_38698123e-25738 - 79710060 / 60plus
Harvest35U35_340505052e-22451 - 50510055 / 55plus



Contig Sequence (812 bp)

>U35_3869 812 Hv_44K_v2
TTATTCTCCAGGGGAAAGGAAGCGAGGCGCAGGGAGGGAGTGTGGCACGAGCACGCCCAC
CCCTGAAAAATGGCGGCCTCCTCCCTCTGGCTGCTGCAGCTCCCGTCTCCTCCTCCTCCT
CCTCCTCCTCCTCACGGCGCCGTCTTCCTCTCGACCAATCACTGCCCCTCTCCTCCTTCG
GCGTCTGCGTCTCCTCTGCTGCACAGGAAGCACGCGCCGGCCAGAGCCAGAGGCAATCTT
GCCTGCAGCTCATCTGGTAGCTCCTCGTCCTCAACTTCCTCCGTTGTGACCAAAGATCAA
GAGGGGGCAGCAGCAGCCGCTCCAACTCCGGCAGCTGTCAGATACGACTACAAGGATGAC
CCTAACTTCAGGGGTTGCAAGGGGTGCGGCCGTGAGGAACCAGAGAGGGGCTGCAACGGC
GAAGGACGGATCATGGGCGGCATAGCCGCCGTCCCCTTGTTCGGGTGGTGGCCGATCAAG
GCCTACCGGCCGTGCCCGGGTTTCGTCGCCTCCGGCGGTCGGTACCGGCGCTACGGTCAG
AGCATGGACGACGTCATAGCCGGCAAGGGACGGAAACTCGCCTCCGAGAAGAAGAAAAGT
GACAAATGATCCACCTCAACCTCAAGGAACTGCAGTGTGCTGGAGAAGGCTGTCCAACCT
TCATAGATTTTGTTTCAGGCTTGAGGTTGTCTAGCTAGGTCAGATTGTACGGCAAATGTA
CTCCACTCTTCTACCTGGTGATCATGTCTACATCACGCTTGCTAAATCTAATAATAGAAG
TAAAACGGTTTCAGGAAAAAAAAAAAAAAAAA



Homology of Contig U35_3869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi2g08030.11683e-58
Arabidopsis v10None