barSeed - Barley Seed Development Database

Probe CUST_634_PI390587928

Source Contig U35_14079

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_634_PI390587928	Hv_44K_v2	CGCGCTCTTGTGTGAAACTTATGTCAACTTTGATTATCTACGTGCAATTTCATTACTTTG	1957	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356678	2035	2e-24	1920 - 1979	100	60 / 60	plus	ABC04206
MLOC	MLOC_65700.2	1790	2e-24	1636 - 1695	100	60 / 60	plus	ABC04206
MLOC	MLOC_65700.1	2480	2e-24	2308 - 2367	100	60 / 60	plus	ABC04206
JLOC1	JLOC1_43247.1	2506	8e-25	2214 - 2273	100	60 / 60	plus
Harvest21	ABC04206	2046	3e-25	1921 - 1980	100	60 / 60	plus	ABC04206
Harvest35	U35_14079	2090	3e-25	1958 - 2017	100	60 / 60	plus

Contig Sequence (2090 bp)

>U35_14079 2090 Hv_44K_v2
ATCTAAACACTCGAGCACTGTTGGCCTAGGACCCTCATCACCACCGCCCACCAGTCTCGC
CCGCCAGGCCGCCACCCAGCTGCGCCCAGCCATGGCGCGGGAGGAGCTGTCGACGGAGAT
CGTGAACCGCGGCGTGGAGCCGTCGGTCCCGGACGCCGGGTCGCCGACCTTCTCGGTGCG
CGTGCGCCGCCGGCTGCCGGACTTCCTGCAGTCGGTGAACCTCAAGTACGTGCGGCTCGG
GTACCACTACCTGCTGAGCCACGGCGTGTACCTGGCCACCATCCCGGTGATCGTGCTGGT
GTGCGGCGCCGAGGTGGGCAGCCTCAGCCGCGACGAGCTGTGGCGCAAGGTGTGGGACGA
GGCTACCTACGACCTCGCCACCGTGCTCGCCTTCCTCGCCGTCCTCGCCTTCACCATCTC
CGTCTACATCATGTCCCGCCCCAGGCCCATCTACCTCATCGACTTCGCCACTTACAAGCC
CGCCGACGAACTCAAGGTCTCCAAGGCGGAGTTCATCGATCTGGCGCGCAAGTCGGGCAA
GTTCGACGAGGAGAGCCTTGCGTTCCAGGCGCGGCTGCTGGCCAAGTCCGGCATCGGGGA
CGAGTCCTACATGCCGCGCTGCGTCTTCCAGCCCGACGCCAACTGCGCCACCATGAAGGA
AGGCCGCGCCGAGGCCTCCGCCGCCATGTTCGCCGCGCTCGACGAGCTCTTCGACAAGTG
CCGCGTCCGCCCCAAGGACGTCGGCGTCCTCGTCGTCAACTGCAGCCTCTTCAACCCCAC
GCCCTCGCTCTCCGCCATGATCGTCAACCACTACAAGATGCGCGGCAACATCCTCAGCTA
CAACCTCGGCGGCATGGGCTGCAGCGCCGGGGTCATCTCCATCGACCTCGCCCGCGACAT
GCTCCAGGCCAGCGGCGCCGGGCTCGCCGTCGTCGTCAGCACCGAGGCGGTGTCCTTCAC
CTGGTACGCCGGGAAGCGCCGCTCCATGCTCATCCCCAACGCCTTCTTCCGCGCGGGCGC
GGCCGCCGTGCTGCTGTCCAACCGCCGCAGGGACTTCCGCCGCGCCAAGTACCAGCTGGA
GCACGTGGTGCGCACGCACAAGGGCGCCGACGACCGCGCCTTCCGGTCCGTGTACCAGGA
GGAGGACGAGCAGCGGATCAAGGGCCTGTCCATCAGCCGCGACCTGGTGGAGGTGGGCGG
CCACGCGCTCAAGACCAACATCACCACCCTGGGCCCGCTGGTGCTCCCCTTCTCGGAGCA
ACTGCTCTTCTTCGCCGGCGTGCTGTTCCGCCACCTGTACCCGTCCAAGACGTCCACCCC
GCCGCCGCCGGCCGCCAACGGGGACACCTCGGCCGCCGCGCCCTACATCCCGGACTTCAA
GCGCGCGTTCGAGCACTTCTGCATGCACGCGGCCAGCCGCGACGTGCTGGAGCACCTGCA
GCGCAACCTGGGGCTCCGCGACGCCGACCTGGAGGCCTCCCGCGCCGCGCTGCACCGCTT
CGGCAACACCTCCAGCAGCAGCATCTGGTACGAGCTGGCATACCTGGAGGCCAAGGGTCG
CGTCCGCCGCGGTGACCGCGTGTGGCAGCTCGCCTTCGGCTCCGGGTTCAAGTGCAACAG
CGCCGTGTGGCGCGCCGTCGGACGCGTGCGCCGCCCGTCCAGGAGCCCCTGGCTGGACTG
CATCGACCAGTACCCGGCGCGCATGGACGCCTGAGGCCTGACCGATCGAGACAAGCAGGC
GCATGCACCATGCAGGTGCTAATAATTAAGCGAGACACGTCGCCGCATCCGCGTGGGTAA
GTGCAGGCTAATGGATTTGCATGTAACTGCATGCAGTGCCGCTGGTTAAGGTTTGAGCTT
TGGTTAATTTGTGCTGGTGTTGTAGCAGTTGTCATCATTATTAAGGGTTTTAATCATAGA
CTACGTACGTACGTACCATAATGCGCAAGTGTATGTGCGCGCTCTTGTGTGAAACTTATG
TCAACTTTGATTATCTACGTGCAATTTCATTACTTTGTTAAAAAAAAAAAAAAAAAAATT
ATATAAGTTGGATGTGCCTTATGGATGGTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08360.1	543	protein\|3-ketoacyl-CoA synthase 10, putative, expressed
Brachypodium v1_2	Bradi1g72560.1	545
Arabidopsis v10	AT2G26250.1	550	\| Symbols: FDH, KCS10 \| 3-ketoacyl-CoA synthase 10 \| chr2:11170799-11173059 REVERSE LENGTH=550