barSeed - Barley Seed Development Database

Probe CUST_6347_PI390587928

Source Contig U35_3874

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6347_PI390587928	Hv_44K_v2	TGTCATCCTTCGTCTTATGAAGAAGAAGAAGAAGAAAAAAGTCCTTTAGCTGAGGTGCAC	676	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.363	15.345	1.344	0.273	0.744	0.483
Raw	267.710	402.251	31.228	7.589	8.756	6.197

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (872 bp)

>U35_3874 872 Hv_44K_v2
GGCCTCTGGAGACCACCACACACGGAACCGGAAGCCCTTTCCTCCCCGGTGCTCAATCCT
CCATAGATGGGCTCCCTGCGAAGCAGCACGAGCACGGCAGTGGACAGCGTGGACGCGGAG
GCGGCGTGCGCACTGCTGGCCTTGGAGCAGTACGGGTACGTGGACGTGCGGATGTGGGAG
GACTTCGAAAAGGGTCACGTTGCCGGTGCACGCAACGTGCCCTACTACCTCTCCGTCACG
CCCCATGGCAAGGAGCGCAACCCGGACTTCGTCGATCAGGTTGCGGCGCTCCACTCCAAG
GAGGACCGGTTCCTTGTTGGCTGCCGCTCTGGGGTCCGGTCCAGGCTCGCCACCGCAGAC
CTTGTCGCCGCTGGATTCGCAAACGTGAAGAACCTCGAAGGCGGCTACCTCTCCTTGCTC
AAGAGCGCAAGTTACCAAGCAGCCAGCCACCAATGATCCATCAATTGATTCTTTGGAGTT
TGGAAAGTTTGTTAGTGACCTGTTTGTGTACTATGTATCTGTCATCCTTCGTCTTATGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAGTCCTTTCGCTGAGGTGCACGGCTGGGAT
TGAATGTACTTCAAAGGGAAAACAAAGCATTATGTATGTAGGTACGTATATTGGACCTGT
TTGTGTACTATGTATCTGTCATCCTTCGTCTTATGAAGAAGAAGAAGAAGAAAAAAGTCC
TTTAGCTGAGGTGCACGGCTGGGATTGAATGTACTTCAAAGGGAAAACAAAGCATTATGT
ATGTAGGTACGTATATTGGACATGGACTTTGGACCAACCAATTTTCAAGAAATAAAAATG
TGTGCGTGTACACCTGAAAAAAAAAAAAAAAA

Homology of Contig U35_3874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g56037.1	133	4e-56
Arabidopsis v10	None