barSeed - Barley Seed Development Database

Probe CUST_6332_PI390587928

Source Contig U35_4394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6332_PI390587928	Hv_44K_v2	AACGGCTGTGATTGTACTTAGCAGCAACCAATAAAATGAGTATCCCTTGCTGCCAAAAAA	527	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.601	2.841	1.485	0.720	0.147	0.157
Raw	2320.643	2470.700	1099.207	927.580	58.633	70.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19800.1	607	9e-22	531 - 585	100	55 / 55	plus	ABC10159
JLOC1	JLOC1_13718.1	660	5e-22	544 - 598	100	55 / 55	plus
Harvest21	ABC10159	622	3e-25	528 - 587	100	60 / 60	plus	ABC10159
Harvest35	U35_4394	623	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_4394 623 Hv_44K_v2
GCTTTCCTCTGCCCCCCACCCTTGATCCCGGAGAAGAGGAAGAAGAGGCCACAGCTAGCT
TGCCCGAGGAAGGAGATGGAGGCGAAGAAGTTGAGGGTGGCCGGCGCCATGGCCGCGCTG
TGCGTGCTCCTGCTCCTCGTGGAGCTGCAGCAGGTGGCTGCCATGTCCGACTCCGAGTAC
TGCAAGTGCTATAGAGACTGCTACGCCGAGTGCAGGCACGACGCGCCGCGCTGGCTCTGC
CTCCCATCCTGCGTCAACTACTGCAGCTCCAGCCCCGGCACCAGCCAGGCCGCAGTCGGT
GATGACGGCGGCGCCACATGCCGGATGGCCTGCAAGCTGAGCCTGAGCGTCTGTGGCTGG
GCGGCGGAGCCAGACGATGCAGCTGACGCCGCGATCTGCATGCAAAACTGCAACAGGAAA
TGGAGCCAGAAGGCCAATTGACTTCCAAGAGCTGCTCCGTTCTAGGAGAAGAGAAAAGAA
TTGAAGAGCTAGCTTCTCGATCATGGGATCTTATATAATCGATGTTCAACGGCTGTGATT
GTACTTAGCAGCAACCAATAAAATGAGTATCCCTTGCTGCCAAAAAAAAAAAAAAAAACT
CCCTCCCTTTCTAANAAAAAAAA

Homology of Contig U35_4394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None