barSeed - Barley Seed Development Database

Probe CUST_6328_PI390587928

Source Contig U35_4398

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6328_PI390587928	Hv_44K_v2	CTAATGTGGAGTCCTGATTGGACTTCTACCGGCGTGTGTCAAATTTTGTCCTAATCGAAA	370	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373178	1487	6e-24	1382 - 1440	100	59 / 59	plus	ABC11746 ABC25902
MLOC	MLOC_63358.1	1100	6e-24	850 - 908	100	59 / 59	plus	ABC11746 ABC25902
JLOC1	JLOC1_41487.1	1258	3e-24	982 - 1040	100	59 / 59	plus
Harvest21	ABC25902	438	3e-25	371 - 430	100	60 / 60	plus	ABC25902
Harvest35	U35_4398	438	3e-25	371 - 430	100	60 / 60	plus

Contig Sequence (438 bp)

>U35_4398 438 Hv_44K_v2
TCTGAGCAAGAAAAGCAGATCCTACAGTCTATGCCAGCAACGTCAGAAAATTGCTTGCGA
CTGAGGGTAATTTAGTTCTTTCTAATCTTGGGCTGGCTGAAAAGCGTGTGTATCATGCAG
CACTTAATGGACTGTTGTGTCAAAGCTAATTTGGATACACATGATGATAGTTTTACTTCT
CGTCTTTGTACATTGTGAATTAAATTTGGTGTTTGTTCTTTCTCAGTGAGGTCAGACACC
ATGTACATGTGTGTGCCTTTGAAACAAACCTGAGTTAGGTCTTGGGGCCAGAAGAAATAG
AGATAGACGGGTAATAGTTAAAAACTAACTTCTCTTTATTTGATTTGGCATGTGATTTGC
TTGACATCCACTAATGTGGAGTCCTGATTGGACTTCTACCGGCGTGTGTCAAATTTTGTC
CTAATCGAAAAAAAAAAA

Homology of Contig U35_4398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None