barSeed - Barley Seed Development Database

Probe CUST_6327_PI390587928

Source Contig U35_4399

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6327_PI390587928	Hv_44K_v2	CTGAAAGGCTCCATGAGGTTTCTCAAGACGAGAATTCCTCTATGATGTTACTCTTTCCTG	744	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373178	1487	2e-24	742 - 801	100	60 / 60	plus	ABC11746 ABC25902
MLOC	MLOC_63358.1	1100	2e-24	210 - 269	100	60 / 60	plus	ABC11746 ABC25902
MLOC	MLOC_63358.2	866	2e-24	205 - 264	100	60 / 60	plus	ABC11746 ABC25902
JLOC1	JLOC1_41487.2	829	8e-25	186 - 245	100	60 / 60	plus
JLOC1	JLOC1_41487.1	1258	8e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC11746	1399	3e-25	745 - 804	100	60 / 60	plus	ABC11746
Harvest35	U35_4399	1385	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (1385 bp)

>U35_4399 1385 Hv_44K_v2
CAGGACTCGCCCATCGCGCCGATCTCGGCTTCCCGTCTCTCTCCACTCGCCTCAATCCCC
AATGGGCCGTCGACACCACCACCGCCGCGCCTTCCCACCCTGAAGGCGGCGATGGCGGTG
GAGAGGCAGTGCGGCCGCTCCTCTCCGGCGCGCCCGCTGAGGAGGAGGAGGAGGAACTGG
ATATCAGGTACGCGCCCTATGCGCGCCGGGATGCGTACGGGCCGATGGGCCGTGGGCCGC
TTTCTTCGGCGCAGGTGGCACGGTTAGTGCTCGCCGGCGTCGTCCTCCTCCCGCTCCGTC
TCATCGCAGGGATGCTCCTGGTCGTCGCCTACTACCTCGTGTGCCGTGTGTGCACGCTGT
TCGCGGGCGGAGTGGGAGAGGGACGTCCCCGCCTACAGGGATTGAAGAGGGAGGCCGTGC
TGCGTGCTGGCCGCGTGTTGTCGCGGGCGATGCTCTTCGTGTTCGGGTTCTACTGGATCC
CCGTGTCCGATCGAAGCTTCCCCAATGCCGAGGATGTACCTAAAGATCACTCTGAAGAAC
TGGAAAGACCAGGGGCGATTGTATCTAATCATGTGTCATATGTGGACATTCTTTATCATA
TGTCAGCTTCTTCTCCGAGTTTTGTTGCTAAGAACTCAGTGTCGAAGTTGCCGTTGATTG
GTCTCATAAGCAAATGTCTTGGGGGTATTTTTGTTCAACGAGAATCCAGATGTTCAGATT
CTAAAGGTGTCTCAGGTGCTGTAACTGAAAGGCTCCATGAGGTTTCTCAAGACGAGAATT
CCTCTATGATGTTACTCTTTCCTGAGGGTACTACTACGAATGGGGATTACCTTCTCCCAT
TTAAGACAGGAGCCTTTCTTGCAAGGGCACCATTGCAACCTGTAATTTTGAGATATCCTT
ACAGGAGATTTAGTCCAGCCTGGGACTCCATGGATGGGGCACGTCATGTGTTTTTGCTCC
TCTGTCAGTTTGCAAACTACATGGAGGTGGTTCGCTTGCCTGTATACTATCCTTCTGAGC
AAGAAAAGCAGGATCCTACAGTCTATGCCAGCAACGTCAGAAAATTGCTTGCGACTGAGG
GTAATTTAGTTCTTTCTAATCTTGGGCTGGCTGAAAAGCGTGTGTATCATGCAGCACTTA
ATGGTAATAGTCCTCGTGCTCTGCATCAGAAAGATGATTGAAAGCCCTTGCATCACTCTC
TGTACACTATCTGTTGAGATGATTGTAACAATGTATGCCAACTTTAGCTGATCATGTGAT
TCATGGTTTCTCTGTTTGAGGCGTATGCTGATTGATGAATACATTATACCTATTTTGAGA
TGAATTCCCTCGTTATATTACATTGTATAGAAACCCATTAAACATTATAGTTCAATAATC
ATGTC

Homology of Contig U35_4399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28960.1	405	7e-170	protein\|acyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g11730.2	375	0.0
Arabidopsis v10	AT1G80950.1	398	3e-129	Phospholipid/glycerol acyltransferase family protein \| chr1:30412653-30414935 REVERSE LENGTH=398