barSeed - Barley Seed Development Database

Probe CUST_6318_PI390587928

Source Contig U35_21409

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6318_PI390587928	Hv_44K_v2	TGAATTCGGCACATGCATTTAAGAGATTAGCAATGTAATGAGGAAAAATAGAAGGATCTG	993	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63119.2	1319	2e-24	58 - 117	100	60 / 60	minus	ABC15209
MLOC	MLOC_63119.1	5358	2e-24	133 - 192	100	60 / 60	minus	ABC06271 ABC06272 ABC15209
JLOC1	JLOC1_41334.1	4280	8e-25	4081 - 4140	100	60 / 60	plus
Harvest21	ABC15209	1070	3e-25	994 - 1053	100	60 / 60	plus	ABC15209
Harvest35	U35_21409	1070	3e-25	994 - 1053	100	60 / 60	plus

Contig Sequence (1070 bp)

>U35_21409 1070 Hv_44K_v2
GCCCACTCGCTCTCGCGTCGCGTCTCTCGGCGGGCGTTTACTCTCTCCGGCGACCCCGAC
CTCCCGTCTCCGGCGACGGCTGCCGCCCCGCCTCCCTCTCAACCGGCTCGGCGGTGCTCT
ATAGCCTGCCATGTCGAAGAAGAGGGGCCTTTCCTTGGAGGAGAAGCGGGAGCAAATGCT
TCAAATATTTTACGAGAGTCAAGACTTCTATCTGCTTAAAGAGCTTGAGAAGATGGGTCC
TAAAAAAGGAGTGATCAGCCAGTCTGTTAAGGATGTTGTGCAAAGCCTGGTGGATGATGA
TCTTGTCCTGAGAGACAAAATAGGGACTTCTGTGTACTTTTGGAGTCTTCCCAGTTGTGC
CGGAAATCAGCTGAGGACTACCTACAACAAGCTGGAGTCTGATCTTTCAAACTCTAAAAA
ACGTTACATGGAGCTTCTTGAGCAGAGAGACGACTTGAAAAGAGGCAGGGAAGACACTGA
TGAGAGAGAAGACGCTTTGGAGGAGCTGAAGGCTGTAGAGCTACGCCATAAGAAGTTAAA
GGAAGAACTAGCAGCTTATGCTGATAGTGACCCATCTACACTAGAGGCGATGAAGGAAGC
TACTGAGGTTGCCCATTCGGCAGCTAACAGATGGACAGACAACATCTTCACTCTGCAACA
ATGGTGTTCAACTACATTCCCGCAAGCAAAAGAACAGCTCGAACACATGTACAGGGAGGT
GGGCATAACTGAAGATTTTGAGTATCTGCCGTAATGTGAACAGCCTGCATATGACCTATT
ACATCATTGTACGCAATCTCCCTCAGCACGTGGTGTTGGATCTAGAGAGAGTAGTTGACC
CAAAATTGGCGAGAATCACCCGTACCGCCGGTTATTTAAAGTTTGAGCAGATGATGCCAT
TATCGCACATGTTCTGTTATGTAAATGTCAGATGCCTTGCCTATCACTGTTGTCGGGAGA
AAATGTTTACTATGATAAAACGGTGCTACAAGATGAATTCGGCACATGCATTTAAGAGAT
TAGCAATGTAATGAGGAAAAATAGAAGGATCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g10850.1	236	6e-105	protein\|meiotic coiled-coil protein 7, putative, expressed
Brachypodium v1_2	Bradi4g27110.1	208	4e-121
Arabidopsis v10	AT4G29170.1	230	3e-90	\| Symbols: ATMND1 \| Mnd1 family protein \| chr4:14382985-14385128 FORWARD LENGTH=230