- Probe CUST_6315_PI390587928
- Source Contig U35_21412
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6315_PI390587928 | Hv_44K_v2 | GGAGCATAAACTGGTAGAGGAGGAGGTTGATGCTGACAATTGAGTGTGTAACACATCATT | 419 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.188 | 1.403 | 1.492 | 0.907 | 0.306 | 0.312 |
| Raw | 131.549 | 239.099 | 225.576 | 216.544 | 25.504 | 28.356 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_1443.7 | 5119 | 2e-24 | 4849 - 4908 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.4 | 5430 | 2e-24 | 5051 - 5110 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.2 | 4755 | 2e-24 | 4386 - 4445 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.3 | 3731 | 2e-24 | 3484 - 3543 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.9 | 4327 | 2e-24 | 3954 - 4013 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| JLOC1 | JLOC1_890.13 | 3817 | 8e-25 | 3416 - 3475 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.12 | 3534 | 8e-25 | 3133 - 3192 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.10 | 4303 | 8e-25 | 3902 - 3961 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.8 | 5428 | 8e-25 | 5027 - 5086 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.6 | 4355 | 8e-25 | 3954 - 4013 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.4 | 4350 | 8e-25 | 3949 - 4008 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.3 | 3894 | 8e-25 | 3493 - 3552 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.2 | 4633 | 8e-25 | 4232 - 4291 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.1 | 4959 | 8e-25 | 4558 - 4617 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14794 | 817 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus | ABC14794 |
| Harvest35 | U35_21412 | 817 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus |
Contig Sequence (817 bp)
>U35_21412 817 Hv_44K_v2 ATCAACCAGAAGACCTGTCTGACCTCTTTGCTGGAGCTGGGCAGTCTGACCAAACTAAGA ATACTTGAGCTGAACCTGAATTGGCACATAAGTAGTACAAACAGTGGCATGAAAGCTCGT GAAGATAACTTGGTCATGTCCCTCTGCAAACTAGGCATGCTCAACCTTCGTTCCATACAA ATTCAGAGCTACCATTCTTGTTCCCTTGATTTCCTAATTGACTCTTGGTTTCCTCCTCCT CATCTACTCCAGAATCTGTATTCGCTCAAGCATCTCCACATCGAGATAGTTTGTTATGGC GCAAACATTAGGGAGGTGGAGGCCTTGGAGCATGCTGTCAAGAATGCGGCTGGCTGTCTT TCAGATGAGCTCACTCTGGAAGTGAGTAGATGGGATGAAGAAGAGATTGTTAAGGATGGG GAGCATAAACTGGTAGAGGAGGAGGTTGATGCTGACAATTGAGTGTGTAACACATCATTG AGGGTTCATGAAGGGCATTCATTCTGAGACGCTGAAACTCGCTGCGCCGTTGCCATGATT TCCATGGGAATGCTCGAAGACCCCATCTGGAACACTGGAAGTTGCTCCTACATCTGCGGG AAAATGGACCGATTGATGCGAAACGTAAATGGCCTGTAATTCCAGTTCTGTTCTTTTGGT TGGGATGGGTTGGCGGAAACCCTTGTCGACTTCCAGTTCCATCTCATAACATTAACTCAT GCTAGAGTTTGAACATGATAACATTAGTTTTGTAACACCCTTGTTATTTCCGAGACTTTA ATGACTACGTACAATTTTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_21412 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |