barSeed - Barley Seed Development Database

Probe CUST_6312_PI390587928

Source Contig U35_21415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6312_PI390587928	Hv_44K_v2	GCAACTGTGTTTTTATTACCCAGTTTGATAGAGCCGTTTCTGGTGTTGTCATGTACTAAA	622	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.992	1.859	1.113	0.850	0.432	0.569
Raw	1104.935	1626.289	841.658	980.726	184.756	258.662

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59923.1	1540	2e-23	1454 - 1511	100	58 / 58	plus	ABC14352
JLOC1	JLOC1_39037.1	1646	1e-23	1531 - 1588	100	58 / 58	plus
Harvest21	ABC14352	691	3e-25	10 - 69	100	60 / 60	minus	ABC14352
Harvest35	U35_21415	691	3e-25	623 - 682	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_21415 691 Hv_44K_v2
CAAAACATTTTGCCTCGAAGACCAGGGTGGACTTGGTGCAGTACTACCTCAATGTTTTCC
TCATGAGAAGAGTTTCAAACCAGTGCAGGTTGAGTCTGCTGGAGATTGATAGTGATGAGG
ATGAAGCAGAGGAAGAGGATGATGAAGATCAATCTGATGGCTCCAATTCGTCCCACAGGG
CCCAGGATGTCCAAGAGGTGAAGAAGATCTTTTGAATCCGCTGACAGCTACTTGGCATGC
TTTTCTGCATGTGCACATGTTTTGATGTGCTGAGACACTCATCACCTTGAGTGATCGATC
CTTCAGTCGTTCGCTTAGACCTAGCCCTCCGTTCTGTGCAGAAACTCATGCGAATTGCAC
ACCATTTTCATTATCAATGCTTGCGTCATGGCAGCGGGCAAGCCAATCAGTTGTAGCTTG
ATGCTCAAAGAGCTCATCTGGTCTGAATGTTTTCCCGTGTACAGGAAAAATGAAATACAG
ATCTAAAGACTAAAGGGGGGTAGAAAACAAATGGTCATTGATTTCGTTTCTTTATTGAGA
GTCGAGACTTGAGAGGGTCAAGGTAAGGTGTGTAAACCAAAACCCAAAAGCCATTTGACA
CTCTTACCTGGCAAGATGTTTGGCAACTGTGTTTTTATTACCCAGTTTGATAGAGCCGTT
TCTGGTGTTGTCATGTACTAAAAAAAAAAAA

Homology of Contig U35_21415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None