barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6308_PI390587928Hv_44K_v2TTCTGTAAATAGCGCGAATCAATAAAAATGCGTCTCCAGAACATCTGGTCGTCTAAAAAA612GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6141.8991.3130.8440.3760.461
Raw 933.5311680.768999.1751026.963154.813209.566



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64686.219136e-2421 - 7910059 / 59minus ABC12417 ABC14748
MLOCMLOC_64686.132166e-2442 - 10010059 / 59minus ABC12417 ABC14748
MLOCAK37263325093e-212456 - 250910054 / 54plus ABC12417 ABC14748
JLOC1JLOC1_42501.128953e-2488 - 14610059 / 59minus
Harvest21ABC147486833e-25613 - 67210060 / 60plusABC14748
Harvest35U35_214196833e-25613 - 67210060 / 60plus



Contig Sequence (683 bp)

>U35_21419 683 Hv_44K_v2
GCACCTTCTACGCCATGGGCGCGGGCTATGTCAACCCCGCGCTCGCCTTCGACCCCGGCT
TGGTCTACGACCTCCACGCCGACGACTACATCCCCTACCTTTGCGGCCTCGGCCTCGGAG
ACGAGGGCGTCACCGAGATCGCCCACCGCCCGGTCACTTGCGCCGACCTCAAGGCCACCA
CCGAAGCAGAGCTGAACTACCCATCCCTCGTCGTCAACCTGCTGGCCCAGCCGATCACGG
TCAACCGCACGGTGACCAACGTCGGGAAACCCAACTCCGTGTACACCGCCGTGGTGGACA
TGCCCAGAGACGTGTCGGTGACGGTGCAGCCGCCGATGCTGCGGTTCACAGAGGCCAAGG
AGAAGCAGAGCTTCACGGTGACGGTGCGGTGGGCGGGGCAGCCTAGCGTCGCCGGCGCCG
AGGGCAACCTGAAGTGGGTCTCCGATGACCACATCGTGCGGAGCCCCATTGTGGTTCCAG
CCAAGGCCGCGTAGTGATTCTGCAAACGGCAGCATGTATAGCTAGGTAGCATCAGCATCA
GTACTTTAGTAGGCTGCTGCGCTTCCATGGTTTTGCAGTTGCACTGGCTGCATGCAAACT
GGAGCAATTTTGTTCTGTAAATAGCGCGAATCAATAAAAATGCGTCTCCAGAACATCTGG
TCGTCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_21419 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g38080.17602e-98protein|OsSub61 - Putative Subtilisin homologue, expressed
Brachypodium v1_2Bradi3g31690.17379e-95
Arabidopsis v10None