barSeed - Barley Seed Development Database

Probe CUST_6305_PI390587928

Source Contig U35_19102

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6305_PI390587928	Hv_44K_v2	TGTATATGAAGACTCATGAATATATCGAATCCATCGATGCACACTTGCAAGTTGCCGCGC	857	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.825	2.975	0.557	0.680	1.040	0.926
Raw	25.939	33.226	2.548	8.641	2.748	3.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37108.1	1188	8e-25	862 - 921	100	60 / 60	plus
Harvest21	ABC10931	946	3e-25	858 - 917	100	60 / 60	plus	ABC10931
Harvest35	U35_19102	946	3e-25	858 - 917	100	60 / 60	plus

Contig Sequence (946 bp)

>U35_19102 946 Hv_44K_v2
CAGCTCCCCTGCCGACCACACACCGCGCTGTGCTCGAAGCTCTCCCACCGCAAAAGAGGG
CTCGCGATCGTATCCATGGCCGCCGCGACCATCTCCCTCTGCGGCTCACGCTGCGTCGCT
CCGAGCCGGAGCCCCAAAGCTCGCCTCAACTCACAAGCAGCCGCCGCGCCGTACGCGCGG
CCGTCGTCCTCGCGCCCAAGGGCGGTGGTCGTGGCCGCCAAGTCGTCGGGCGAGAAGGCG
GACGAGAAGGTCCCCTCCTGGGCCCGTCCGGGCTCCGACGAGCCTCCTCCGTGGGCTCGC
AACGAAGGCGGGGCCTCGGGGCAGGAAGGCGACGCCGCCCAGGTCCCGTTCTACGCCTAC
CTGCTCGCGTCCGCCGTGACGGCCATCGCCGCCATCGGGTCGATATTCGAGTACACGAAC
GGGCGGCCGGTGTTCGGCGTGGTGGGCACCGACAGCCCCCTCTACGCGCCCATCCTCGGC
TTCTTCGCCGTCACCGGCATCCCGACCTCCGGGTACCTGTGGTACAAGGCCGTGCAGACG
GCGAACAAGGACGCCGAGGAGCAGGATCGCAGGGACGGCTTCCTCTGATCTGGTTCGCTT
GGGAGAGCAATGAACACGCTGAACATATATCGTAGTATCCGTTTTTGGTACTTGGGCTGC
ATGCCGATCCAGCAGAGCAGATGGGTTAGCACTGGGAAAAACAGCAGCAGGGCAGGTGGA
CTAAGAGCAGAAGATCTCGTCTCTTCTTCCTCCTCTTCTACACATGGAGCACTCGCCATC
TGAAGTCAGCATTTGAATGGAGGAAATGTGTCCCTTCAGTTTTCCCTGGCATAATTTTTC
GCGCCTTGATGTGAGTGTGTATATGAAGACTCATGAATATATCGAATCCATCGATGCACA
CTTGCAAGTTGCCGCGCAAAAAAAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_19102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41190.1	173	2e-64	protein\|expressed protein
Brachypodium v1_2	Bradi2g21500.2	182	2e-78
Arabidopsis v10	None