barSeed - Barley Seed Development Database

Probe CUST_6303_PI390587928

Source Contig U35_19104

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6303_PI390587928	Hv_44K_v2	GCAGAAAGCATGGCATATTGTTCATCCTGTTCCTTTGGAGAGTTTTCATTCCCCTTTAAT	1102	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.308	1.762	1.055	0.822	0.357	0.421
Raw	681.932	815.798	430.483	525.821	81.186	103.226

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363763	2293	9e-22	2212 - 2273	97	60 / 62	plus	ABC12217
Harvest21	ABC12217	1162	3e-25	1103 - 1162	100	60 / 60	plus	ABC12217
Harvest35	U35_19104	1162	3e-25	1103 - 1162	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_19104 1162 Hv_44K_v2
GAGCGGTGCGGCGGCTGCCCCCGCCAAGATGGGCGTCAAGGCATTGTTTGGTAGTAGCGG
CGCGGTGGCTGCCCCTACCCAGGTGGGCAGCGTGGTGGCGCCATTAGTTGGTACTAGTGG
AGTAGCCCCTGGTGCTGCTGGGGTGGTGAGACAGAGTAGTGCTGCTCTTGGTGCTGGTTT
AGGGTCGAGCAAGAGGACTAGCTGGCTGTCGAGGTGGGTGAATTCCTGCTCGGATGATGC
AAAGACCGTCCTTGCTGCTGTGACTGTACCTCTGCTCCACAAATCCTATCTAGCTGAGCC
GCGGTCCATCCCTTCGAAATCAATGTATCCAACATTTGATGTTGGTGACCGGATTCTCGC
CGAGAGGGTTTCATATATTTTCCGGGAGCCTCAAGTTTTGGACATTGTGATCTTCCGTGC
ACCTCTAGTCCTTCAGGCATTGGGCTACAGCTCAAGTGATGTGTTCATCAAGAGAATTGT
GGCCAAGGGAGGGGACATCGTTGAAGTGACTGATGGTCAATTATTAGTTAACGGAGTAGT
CCAAGATGAGGACTTTGTGCTTGAGCCACCCGATTATGAAATGGATCCAGTGAGTGTGCC
TGAAGGCTATGTGTTTGTGCTGGGGGACAACAGAAACAACAGCTTCGATTCCCATAACTG
GGGACCGCTTTCCGTGAAGAACATTCTTGGGAGATCTGTGCTTCGATACTGGCCACCATC
GAAAATAACAGATACGATCTATGACCATGATGTGGTTCATGACATGGCAATTGCAGGCAT
CTCCTGAGACACGCAGTTGGTGCGGCAATTTCAAACCGCCCCATTTTTTATTGGCAGAGC
ATCACTGATGTTCTCTGCTGCATTTTTTCTTCTCCTCTAGCTATTTATTTGATTGATGTC
GCCTTGCACGTAATGCCTGGCTGACTCTCAGTTTTTCCCTGCCGTAACAGCAGATGCTTG
TTTAGAGGCAACAATTCTTGTACTGTAACCAAAGGTCTGGCTCGTCTGTCAAATGAGCAT
CCATGGCAGCGCATGGAAATTTTGTTATGTTTGGCAAAAGGAGAGTCTGTTGATCTGTTC
CAGATCATATAATGTATAAGAAGCAGAAAGCATGGCATATTGTTCATCCTGTTCCTTTGG
AGAGTTTTCATTCCCCTTTAAT

Homology of Contig U35_19104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55640.1	471	2e-112	protein\|OsSigP2 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
Brachypodium v1_2	Bradi1g07570.1	474	2e-130
Arabidopsis v10	AT1G06870.1	367	4e-84	Peptidase S24/S26A/S26B/S26C family protein \| chr1:2108832-2110642 FORWARD LENGTH=367