barSeed - Barley Seed Development Database

Probe CUST_6301_PI390587928

Source Contig U35_19106

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6301_PI390587928	Hv_44K_v2	CTTACTGATATGTAATCTTGTAACTGTGTTTGTCCTACGTAAGTTGCAACATCTTCTGAA	1090	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.194	0.398	0.981	1.392	1.050	1.286
Raw	186.083	612.495	1317.370	2872.807	761.886	1029.762

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356855	1225	2e-24	1143 - 1202	100	60 / 60	plus	ABC13481
MLOC	AK372159	1404	2e-24	1079 - 1138	100	60 / 60	plus	ABC13481 ABC14213
MLOC	MLOC_37223.1	2727	2e-24	1457 - 1516	100	60 / 60	plus	ABC13481 ABC14213
MLOC	MLOC_37222.1	1374	2e-24	581 - 640	100	60 / 60	plus	ABC13481 ABC14213
JLOC1	JLOC1_24078.1	2799	8e-25	1282 - 1341	100	60 / 60	minus
JLOC1	JLOC1_24077.1	2229	8e-25	584 - 643	100	60 / 60	plus
Harvest21	ABC13481	1099	3e-25	1022 - 1081	100	60 / 60	plus	ABC13481
Harvest35	U35_19106	1168	3e-25	1091 - 1150	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_19106 1168 Hv_44K_v2
AAGGCGGAAACCCACCAGCCCAGTCGGCCGAAAGCAAAAAAGAACAACGAAATTCCCACC
ACCGACCGCGTCACGCGCGCGCACGCGCACCCGCGCTGAAAACGGCCAGCCGTCCGCGCC
CCGCGGCCAGCCGACGCGTCCCCGCGCGCATGCCGCCGCCCAGCCTGACCGCCGCGCACG
ACCGGGCCTCCGCCGCGAACGGCCTCGCGGGGCCGGAGACGCGCCGCCGCGCGGGCAAGG
GCAAGAAGGTCCACCCGCTGCCGCCCGACGGGGCTGCGATGGGCGACGGCGGCGAGAGGC
TGGCCGGCGGGAGGAGGCCCGCGGACTGGCTATCGCCGTCCGGTGTGGCCGGCATCCTGC
GGCGGCACCCGCTGCCGGCGCTGTTCGCGTGCGGGCTGCTGCTCTTCATGGGCGTGGAGT
ACACCATCCCCATGATCCCCGCCGCCGCGCCGCCCCTCGACCTCGGCTTCCACGCCACCG
CCGCCATGCACGCCGGGATCGCCGCCCGCCCCTGGCTCAACTCGCTCCTCGCCGCGCTCA
ACACGGTGTTCGTCGCGATGCAGGCCGCATACATCCTGTGGGCCGTCCTCGCCGAGCAGC
GGCCGCGTGCTGCCATTGCCACGCTGATGATGTTCACCTGCCGCGGCCTGCTCGGCTGCT
CCACGCAGCTGCCCCTGCCGGCGGAGTTCCTGGGGTCCGGGATGGACTTCCCCGTGGGGA
ACGTGTCCTTCTTCCTCTTCTACTCCGGGCATGTCGCCGGCGCGGTGATCGCGTCCATCG
ACATGCGCCGCGTGGGACGACGCAGGCTGGCGGCGCTCTACGACGCGCTCAACCTGGCGC
AGGGCGTCAGGCTGCTCGCGTGCAGAGGGCATTACACCATTGACCTGGCCGTCGGCGTCG
GCGCGGGCCTCCTCTTCGACATGCTCGCCGGCTGGTACCTGGACAGCAAGAATGTCGACA
GCGGCGACAGCCGTTGCTGCAGCAGCTGCCAAAAGGCTCTCGTCTCAGAGAAGCTTACAT
CATAGGCCCATCAAAAGGCCGTGGAATTGCAGTGGACTGGACATGATCCAAGTCATTTTT
TTAAATGCTACTTACTGATATGTAATCTTGTAACTGTGTTTGTCCTACGTAAGTTGCAAC
ATCTTCTGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_19106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40500.1	308	5e-126	protein\|expressed protein
Brachypodium v1_2	Bradi1g36430.1	294	6e-156
Arabidopsis v10	AT3G15820.1	301	6e-82	\| Symbols: ROD1 \| phosphatidic acid phosphatase-related / PAP2-related \| chr3:5351217-5353573 FORWARD LENGTH=301