barSeed - Barley Seed Development Database

Probe CUST_6300_PI390587928

Source Contig U35_19107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6300_PI390587928	Hv_44K_v2	CAGTGTTCTGGTAAATGTGCTCATGAGTAATAAAATTGGAATGTTGTCTGTGTGCAAAAA	951	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.262	2.821	1.159	0.679	0.390	0.585
Raw	110.747	156.878	54.201	50.966	9.978	16.602

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21990.1	1127	3e-22	1 - 56	100	56 / 56	minus	ABC12173
JLOC1	JLOC1_15245.4	1004	1e-22	948 - 1003	100	56 / 56	plus
JLOC1	JLOC1_15245.3	1021	1e-22	965 - 1020	100	56 / 56	plus
JLOC1	JLOC1_15245.2	1035	1e-22	979 - 1034	100	56 / 56	plus
JLOC1	JLOC1_15245.1	965	1e-22	909 - 964	100	56 / 56	plus
Harvest21	ABC12173	954	3e-25	883 - 942	100	60 / 60	plus	ABC12173
Harvest35	U35_19107	1025	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_19107 1025 Hv_44K_v2
CTTGTCTTCTTTGTCCATATCATCACCTTGTAGAGTTCGCCCACGCTTGTCTGGCCTCAC
TGCTCATCGTTCACCAGCTGACCAGCAGAGCTGCAGGTGGTGCGCGTCGGGCATGGCAGC
TATGAAGCCCGTCCTGTACAGCGCGGCGATCAGCTCCTGCTCCTACCGGGTCCGCATCGC
CCTCACCCTCAAAGGCGTGGAATATGAGTACAGGGCGGTGGCATGGAATGATCCAGATTA
TGAGAAAATCAATCCAATTAAGTACGTGCCAGCGCTGCAAGACGGGGATATCTTGGTTTC
AGACTCTCTTGCAATCATATTGTATCTTGAAGACAAGTATCCCCTGCACCCTCTTTTACC
TCAAGATCTGAAAAGGAAGGCTCTTAATCTGCAGATTGCAAACATTGTGTGCTCAAGCAT
TCAACCTCTTCAGTGTTATGCTGTTGTCGGGTTAGTTAACGGCAAATTGGGCTCCGATGA
GAGCCTTCAGATAGTGCATCATTACATTGACAAGGGATTTAGAGCAATTGAAAAACTTCT
GGAAGGATGCAACAGTAAATTTGCTACTGGAGATGAAGTCCAACTGGCGGATGTGTTCCT
TGCTCCCCAGATACACGCTGGCGTGACACGCTTCAACATCGACATGTCAAAATATCCACA
TTTGGAGAGATTTTACAAAGCATACATGGAAATCCCAGCGTTTCAAGCCGCACGCCCTGA
AAACCAGCCAGACGCCCCTTCACTCCTTCAGTGAAAAATGCAGCTGATTTTCGAGGCGAT
TGTACTTTGTAATAAAACATCGACGGTTCTTCTGGTGTCCATGGATGTAGAAGAAGCTCG
CTTTTTTAGAAGTGAATTAGTTGAGAATAATGCAATTCCCCTCAATGGGAAAAGAATATC
ACGCTCCAGTTGATTTATTTGTATGTGCACTTCAGGTAAAGCAGGGAAGTCCAGTGTTCT
GGTAAATGTGCTCATGAGTAATAAAATTGGAATGTTGTCTGTGTGCAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_19107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10720.1	215	2e-121	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi4g40182.1	214	4e-128
Arabidopsis v10	AT2G02380.1	223	2e-69	\| Symbols: ATGSTZ2, GSTZ2 \| glutathione S-transferase (class zeta) 2 \| chr2:626878-628569 FORWARD LENGTH=223