barSeed - Barley Seed Development Database

Probe CUST_62_PI390587928

Source Contig U35_7809

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_62_PI390587928	Hv_44K_v2	CGGGACCACCGTCCGCGTCCGCGGGGACGCGGGCGGCATCTCGTGCCGCGACTTCAGCCT	451	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64189.2	2802	3e-21	3 - 62	97	58 / 60	plus	ABC18481
MLOC	MLOC_64189.1	2416	3e-21	5 - 64	97	58 / 60	plus	ABC18481
JLOC1	JLOC1_42115.1	2987	2e-21	7 - 66	97	58 / 60	plus
Harvest35	U35_7809	511	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_7809 511 Hv_44K_v2
TGTTGGCCTACAGGCCCGGCTACATCCCCCCATTTCAAACCATCCTCCCCCTCCCCCCTC
TCCCCATCTCGCGCACGCCATCCACCCACCCACCAATCACGCGGATTTGCGCCTCCCGAC
TCCGCCAGCCACCACCCAGATCCGGCGACCCAGCCCGATTCGCGACCGCCCCCGGGAACC
CTAGATCGGACCGACCCCTGCCAGGGATGGCGCCGGTGCCGACGCCGTCGTCGCGGACGG
GCCCGCCGTCGACGCCGCAGGCGACGGCGGGGGGCGCGACCCCGTTCAGGACGCCCGCCT
CCAAGCACCGCCTCCATTTCCCGCCCGCCTCCACCCCCCGCGGCGCGGGCGGGGCCGCCA
CGGAGCACCCCGTCGAGGTCATCGGCCGCGTGCGCAACCTCACGGCCTCCGCCGCCGGCG
CCTCGGTGCTGGAGGTCCCGGGCGGCGCGGGCGGGACCACCGTCCGCGTCCGCGGGGACG
CGGGCGGCATCTCGTGCCGCGACTTCAGCCT

Homology of Contig U35_7809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None