barSeed - Barley Seed Development Database

Probe CUST_6297_PI390587928

Source Contig U35_21420

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6297_PI390587928	Hv_44K_v2	TAAATGTGCGTCTGTGTTCGCTCGCTGTATATCAGTTGGTCGTCTCTGAATATATGGCTC	785	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.138	1.244	1.174	0.858	0.405	0.373
Raw	3330.053	5588.750	4745.233	5259.487	899.885	895.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44134.2	2067	2e-24	2003 - 2062	100	60 / 60	plus	ABC15041 ABC44002
JLOC1	JLOC1_28573.1	2811	8e-25	2751 - 2810	100	60 / 60	plus
Harvest21	ABC15041	877	3e-25	786 - 845	100	60 / 60	plus	ABC15041
Harvest35	U35_21420	877	3e-25	786 - 845	100	60 / 60	plus

Contig Sequence (877 bp)

>U35_21420 877 Hv_44K_v2
TAGTACTTCACTAATATCCCCATTGGAAGATGACAGTTCAAGGGAAATGTTTAGCCTTAT
AAAGAAGCTCAATATTGCTCCTCAACCCCCCAAGAGGCGGGGAAAGCAAGCAATCTCAAA
TCTTGAAATGCTTATGGTCGGAAGTAACAGCAACTCATCATCAAAGTCGTCTTTTCTTGG
CCGAACAACGAGTGGTCCAATCTCATCTTCCCATAGATCAGTTTACAAAGGCTACATTTT
CGGTCGCGATGACAGCAATAGCAACAGCAAGAGCTGCTTTGCAGCCTCTGAGAGTAACTC
AGACGTGCAGGACCAGGCGAACCCCAGCCAAGCCAAGAAAGCGAAGTTCAGCAGTTCACA
GACAAAGCCAGCCGCATCAGGCACAAGCTCTGAGGGTGGCTCGAGTTCAGGCGCCTCTCT
GTTTGAGCTCCTCCGCAGGTCAACTTCCGGCGCCGAAAAGCAAGAGCACAAGCGCCCTGA
AAGCTTCGGCATCATCACGGAGAGCCAGGCCGTGCACCAGTTCTCAGCGTTCAAGCTGTC
AAGGAAGTTCTCTAAGATAGGAGCAAGGAACTGACTGACATAGCCTCCCTGGCTCCCTTG
CCCAACTCTCACCATCTCCACCATGCACACATGTTTATGTCGAAGCAAATCACATTTTTC
GTGTTATATTTGGTGTAGCCTGTAACTTGTTTCCTCCTGCTCCCTGCTTGTGCTCTGGGA
AAATGTGCATTGGATAAACTCTGTATCACCTTAGGTTCAAGTTTTTTTTTTTGAGGGGTT
CAAGATAAATGTGCGTCTGTGTTCGCTCGCTGTATATCAGTTGGTCGTCTCTGAATATAT
GGCTCTCCTTTTCTGTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59480.1	799	9e-53	protein\|expressed protein
Brachypodium v1_2	Bradi1g04527.1	792	2e-63
Arabidopsis v10	None