barSeed - Barley Seed Development Database

Probe CUST_6293_PI390587928

Source Contig U35_21424

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6293_PI390587928	Hv_44K_v2	AGCAGCTGCATATTCTGAGTTGCCTTCTAGCTGTTGTGTAAATCTGTGTCTAACCTTTGC	1167	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.154	1.545	1.338	1.229	0.582	0.463
Raw	391.101	818.209	612.243	855.673	147.563	125.818

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_21424	1227	3e-25	1168 - 1227	100	60 / 60	plus

Contig Sequence (1227 bp)

>U35_21424 1227 Hv_44K_v2
GGGAAGCTGTATCGGGGAACATACAATGGGGAGGATGTCGCCATTAAGCTGCTGGAGAAG
CCTGAAAATGATCTAGAGAGGGCACAGTTGATGGAGCAACAATTTGTGCAGGAAGTTATG
ATGCTTTCCACCTTAAGGCACCCAAATATCGTGAGGTTCATCGGGGCGTGCAGGAAGTCG
ATTGTTTGGTGTATCATCACTGAATATGCAAAAGGTGGCTCTGTCAGGCAGTTCCTTGCC
CGAAGGCAGACCAAGTCTGTGCCTCTGAGATTGGCAGTGAAACAGGCGCTTGATGTTGCT
CGGGGAATGGCATATGTGCATGCCCTGGGATTTATTCACAGAGATCTGAAGTCCGACAAC
CTTCTAATTTCAGCAGACAAATCCATCAAGATTGCAGACTTTGGAGTTGCTCGAATCGAG
GTAAAAACCGAGGGAATGACTCCCGAAACAGGGACCTACCGCTGGATGGCACCGGAGATG
ATCCAGCACAGGCCTTATGATCATAAGGTTGACGTATATAGCTTTGGGATTGTGCTGTGG
GAGCTTATGACCGGCATGCTCCCCTTCACAAACATGACAGCAGTTCAGGCCGCCTTTGCT
GTGGTAAACAAGAACGCTCGCCCTGCAATCCCACAAGATTGCCTGCCCGCTCTAAGCCAC
ATCATGACCCGTTGCTGGGACGCAAACCCTGAAGTCCGCCCGTCATTCAACGAGGTCGTC
ACCATGCTCGAGGCTGCCGAGACGGACGTTGTGAGCAACGTCCGTAAGGCACGGTTCCGC
TGCTGCATCTCCGAGCCCATGACCACCGACTGAGACTAGTGCCAGGATACAGAGTACCAG
AAAATGAAAAATGGGAAGAAAGAGGATGGGAAAGGAGATGGCGCATTCTCGATGTACAGA
CCACACTGATACACCCGGGCTTTGCGCGTGCCTGCCTATCCGAAGGTCTGATGGCTGCCC
TGGGCTAAGCTAGGTTCTTCATTGCTGCTTTCTATCTTTGTCTTAGTTGCATGGGTTGGA
GTGATTGTTTGCCAAAATATGGATGATGCTACCTTGTATGTTTTCTGTTTTCTTGGAAGG
ATGCTATCTGGTATGTTAACAAGGAGCTATGGTATGGTATGGTATGTATTCTCGGCAAGG
GAAGAGCTATCTTTGTCTTGTGTTGATAGCAGCTGCATATTCTGAGTTGCCTTCTAGCTG
TTGTGTAAATCTGTGTCTAACCTTTGC

Homology of Contig U35_21424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07790.1	422	4e-179	protein\|serine/threonine-protein kinase HT1, putative, expressed
Brachypodium v1_2	Bradi3g05520.2	424	9e-176
Arabidopsis v10	AT2G24360.1	411	2e-159	Protein kinase superfamily protein \| chr2:10364742-10366075 REVERSE LENGTH=411