barSeed - Barley Seed Development Database

Probe CUST_6288_PI390587928

Source Contig U35_21429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6288_PI390587928	Hv_44K_v2	TGGAATTGTTGATAGTAGTGGTGGCCAGTACCATGTTCTGCTCATAATAGCAGATGGACA	657	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61836.5	1861	2e-24	834 - 893	100	60 / 60	plus	ABC14059
MLOC	MLOC_61836.6	1471	2e-24	727 - 786	100	60 / 60	plus	ABC14059
MLOC	MLOC_61836.2	5460	2e-24	3776 - 3835	100	60 / 60	plus	ABC14059
MLOC	MLOC_61836.3	5474	2e-24	3790 - 3849	100	60 / 60	plus	ABC14059
MLOC	MLOC_61836.4	1927	2e-24	1126 - 1185	100	60 / 60	plus	ABC14059
JLOC1	JLOC1_40431.1	4025	8e-25	3047 - 3106	100	60 / 60	plus
Harvest21	ABC16422	720	3e-25	658 - 717	100	60 / 60	plus
Harvest35	U35_21429	720	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_21429 720 Hv_44K_v2
GCTGCCGTTTCCAGGTTAAAACCCTACCCCCGTCGGGGCTTCCACCAAGATTCGTTCTCT
CTTCTCCGGAGACCGCTGATTCTGCGGTTCTTGGCTGCTGCGCTGCTCAGAGGAGCGAGA
GGGGGGGTTTTGTCAGGCGGCCATGGGCGCGTTCGGCTCCAAGGAGTGCTCGTCGGGGCG
GGAGCACCACCACTGCAGCCATGACCACGGCAAGAGCGCCGCGGCGGGAGGGAAAAACCG
CTTCGCCAAGTTCGGCGACGACTACCACACCCTGGAGCAGGTGACTGATGCTCTTTCACA
TGCTGGACTGGAGTCCTCAAATCTAATTGTTGGGATTGATTTCACAAAGAGCAACGAATG
GACAGGTAGAGTGTCCTTCAACAACCGGAGCTTGCACGCAATAGGGAATACTCCAAACCC
ATATGAGCAGGCTATATCCATTATCGGGAGAACCCTCGCACGATTCGACGAGGACAATCT
GATACCATGCTTTGGATTCGGTGATGCTACTACTCATGATCAAAAGGTATTTAGCTTCTA
TCCTGAGAACCAACCGTGTGATGGCTTTGAGCAAGCACTTGGTCGATACAGAGAAATTGT
TCCACAGCTTCGTTTGGCTGGTCCCACTTCATTTGCACCTATGATTGAGACTGCTATTGG
AATTGTTGATAGTAGTGGTGGCCAGTACCATGTTCTGCTCATAATAGCAGATGGACAGGT

Homology of Contig U35_21429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38600.1	397	2e-114	protein\|copine, putative, expressed
Brachypodium v1_2	Bradi3g39190.4	395	1e-111
Arabidopsis v10	AT5G14420.1	468	1e-80	\| Symbols: RGLG2 \| RING domain ligase2 \| chr5:4648355-4650563 REVERSE LENGTH=468