barSeed - Barley Seed Development Database

Probe CUST_6282_PI390587928

Source Contig U35_19115

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6282_PI390587928	Hv_44K_v2	TGTATGTCTGGTGGAAATTTGTTTACTTGATTAGGTGTTGGTCTATCCAGGTGTGCTCAC	565	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.492	1.523	1.185	0.823	0.359	0.372
Raw	2326.737	3750.643	2551.213	2745.626	423.880	479.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366021	3098	2e-24	2985 - 3044	100	60 / 60	plus	ABC24338
MLOC	MLOC_2359.2	1227	7e-23	1074 - 1133	98	59 / 60	plus	ABC24338
MLOC	MLOC_2359.1	1502	7e-23	1349 - 1408	98	59 / 60	plus	ABC24338
JLOC1	JLOC1_1419.1	1393	4e-23	1218 - 1277	98	59 / 60	plus
Harvest21	ABC24338	727	3e-25	566 - 625	100	60 / 60	plus	ABC24338
Harvest35	U35_19115	759	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (759 bp)

>U35_19115 759 Hv_44K_v2
CGATTTGTTATTATTGGCCAGGATCGTGTGGAACCGTTGCAAGCTCTTCAAGATTCTGGG
CAAGAGATTTGTGTGAACATGGACAAGCAAAGGGAGAAGAGAAGACTTGCTGAGAATTGG
AGGCGAAAGAAACACGAAGAGAAGAAAAGTACACGAGAACAAAAGAGAAAGGACAGGAGA
AGTGCTAAAGAGAGGGACTGAATAATAAATGAAATACTGAAAGAGGAGGCATGTATTGTT
TTGATATTATTTGTCTCAGGGTTAGGAGGGGTAAATGTGCTAGGCTGCTTCATCATGAGG
CCACTTCAATTACACGATTCCTGTCAAGAATGCATGCCTTCACTGATGATTTTGACATGA
AAGATGATTGAAGAATGTCAGTTGGAGCAAATGAGATTGCGGCCATGTATTCCGCGTTTT
GCCGTTGAAGATAAGAACTGAGCCCTAGCAGATAATGATCGTCGTGCAATTGACTCATCT
CTGTAACATGTGTATGTTATCACAGTTTATCTTGGGTGTGGTGAAATATTTTTGTTGTCC
TGAGTGAGTTCACCCAGATGTTATATGTATGTCTGGTGGAAATTTGTTTACTTGATTAGG
TGTTGGTCTATCCAGGTGTGCTCACTGAAACAGAAGACTGTAACAGTATATCCAATCCAG
GTGTGCTAGAGGTACAATTATGTCTTCACTGACTTCAACAATCAATTTATTCAGGCAGGT
GTTTCACCATTGCTTCAAAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19115 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None